Related references
Note: Only part of the references are listed.To engraft or not to engraft: an ecological framework for gut microbiome modulation with live microbes
Jens Walter et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
Role of priority effects in the early-life assembly of the gut microbiota
Daniel Sprockett et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2018)
Environment dominates over host genetics in shaping human gut microbiota
Daphna Rothschild et al.
NATURE (2018)
The role of adaptive immunity as an ecological filter on the gut microbiota in zebrafish
Keaton Stagaman et al.
ISME JOURNAL (2017)
The Neonatal Window of Opportunity: Setting the Stage for Life-Long Host-Microbial Interaction and Immune Homeostasis
Natalia Torow et al.
JOURNAL OF IMMUNOLOGY (2017)
Human genetic variation and the gut microbiome in disease
Andrew Brantley Hall et al.
NATURE REVIEWS GENETICS (2017)
Patterns of early-Life Gut Microbial Colonization during Human immune Development: An ecological Perspective
Isabelle Laforest-Lapointe et al.
FRONTIERS IN IMMUNOLOGY (2017)
A critical assessment of the sterile womb and in utero colonization hypotheses: implications for research on the pioneer infant microbiome
Maria Elisa Perez-Munoz et al.
MICROBIOME (2017)
Resistant starch can improve insulin sensitivity independently of the gut microbiota
Laure B. Bindels et al.
MICROBIOME (2017)
The microbiome beyond the horizon of ecological and evolutionary theory
Britt Koskella et al.
NATURE ECOLOGY & EVOLUTION (2017)
Microbial antigen encounter during a preweaning interval is critical for tolerance to gut bacteria
Kathryn A. Knoop et al.
SCIENCE IMMUNOLOGY (2017)
Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance
Stephan P. Rosshart et al.
CELL (2017)
Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
Tommi Vatanen et al.
CELL (2016)
From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites
Ara Koh et al.
CELL (2016)
Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome
Maria X. Maldonado-Gomez et al.
Cell Host & Microbe (2016)
Genetic Determinants of the Gut Microbiome in UK Twins
Julia K. Goodrich et al.
CELL HOST & MICROBE (2016)
A framework for priority effects
Tadashi Fukami et al.
JOURNAL OF VEGETATION SCIENCE (2016)
The gut microbiome-an emerging complex trait
Andrew K. Benson
NATURE GENETICS (2016)
Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota
Jun Wang et al.
NATURE GENETICS (2016)
Association of host genome with intestinal microbial composition in a large healthy cohort
Williams Turpin et al.
NATURE GENETICS (2016)
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
Maria G. Dominguez-Bello et al.
NATURE MEDICINE (2016)
The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism
Peter Spanogiannopoulos et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Simone S. Li et al.
SCIENCE (2016)
Population-level analysis of gut microbiome variation
Gwen Falony et al.
SCIENCE (2016)
How colonization by microbiota in early life shapes the immune system
Thomas Gensollen et al.
SCIENCE (2016)
Antibiotics, birth mode, and diet shape microbiome maturation during early life
Nicholas A. Bokulich et al.
SCIENCE TRANSLATIONAL MEDICINE (2016)
Evolving Perspectives on Monopolization and Priority Effects
Luc De Meester et al.
TRENDS IN ECOLOGY & EVOLUTION (2016)
The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota
Ilias Lagkouvardos et al.
NATURE MICROBIOLOGY (2016)
Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects
Tadashi Fukami
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 46 (2015)
In Vivo Selection To Identify Bacterial Strains with Enhanced Ecological Performance in Synbiotic Applications
Janina A. Krumbeck et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Murine Gut Microbiota-Diet Trumps Genes
Jens Walter
CELL HOST & MICROBE (2015)
Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota
Rachel N. Carmody et al.
CELL HOST & MICROBE (2015)
The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes
Aleksandar D. Kostic et al.
CELL HOST & MICROBE (2015)
From Birth to “Immunohealth,” Allergies and Enterocolitis
Pearl D. Houghteling et al.
JOURNAL OF CLINICAL GASTROENTEROLOGY (2015)
Fitting Linear Mixed-Effects Models Using lme4
Douglas Bates et al.
JOURNAL OF STATISTICAL SOFTWARE (2015)
The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes
Ines Martinez et al.
CELL REPORTS (2015)
Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
A. Murat Eren et al.
ISME JOURNAL (2015)
The Gut Microbiota of Wild Mice
Laura Weldon et al.
PLOS ONE (2015)
Human Genetics Shape the Gut Microbiome
Julia K. Goodrich et al.
CELL (2014)
Role of the Microbiota in Immunity and Inflammation
Yasmine Belkaid et al.
CELL (2014)
Using historical biogeography to test for community saturation
Nelsy Rocio Pinto-Sanchez et al.
ECOLOGY LETTERS (2014)
Synthetic microbial ecosystems: an exciting tool to understand and apply microbial communities
Karen De Roy et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
Gastrointestinal microbiota of wild and inbred individuals of two house mouse subspecies assessed using high-throughput parallel pyrosequencing
Jakub Kreisinger et al.
MOLECULAR ECOLOGY (2014)
Diet rapidly and reproducibly alters the human gut microbiome
Lawrence A. David et al.
NATURE (2014)
Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice
Jun Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Host lifestyle affects human microbiota on daily timescales
Lawrence A. David et al.
GENOME BIOLOGY (2014)
The intestinal microbiome in early life: health and disease
Marie-Claire Arrieta et al.
FRONTIERS IN IMMUNOLOGY (2014)
Discordance between changes in the gut microbiota and pathogenicity in a mouse model of spontaneous colitis
Maria Elisa Perez-Munoz et al.
GUT MICROBES (2014)
Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice
Larry J. Leamy et al.
GENOME BIOLOGY (2014)
Genomic variation landscape of the human gut microbiome
Siegfried Schloissnig et al.
NATURE (2013)
Thymus-derived regulatory T cells contribute to tolerance to commensal microbiota
Anna Cebula et al.
NATURE (2013)
Medicines from microbiota
Bernat Olle
NATURE BIOTECHNOLOGY (2013)
A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology
A. Murat Eren et al.
PLOS ONE (2013)
Long-Term Temporal Analysis of the Human Fecal Microbiota Revealed a Stable Core of Dominant Bacterial Species
Ines Martinez et al.
PLOS ONE (2013)
Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice
Carles Ubeda et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
Microbial Exposure During Early Life Has Persistent Effects on Natural Killer T Cell Function
Torsten Olszak et al.
SCIENCE (2012)
The case for ecological neutral theory
James Rosindell et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
The Human Gut Microbiome: Ecology and Recent Evolutionary Changes
Jens Walter et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 65 (2011)
Phylogenetic limiting similarity and competitive exclusion
Cyrille Violle et al.
ECOLOGY LETTERS (2011)
Disentangling the importance of ecological niches from stochastic processes across scales
Jonathan M. Chase et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
Les Dethlefsen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species
Koji Atarashi et al.
SCIENCE (2011)
Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
Gary D. Wu et al.
SCIENCE (2011)
Role of the gut microbiota in defining human health
Kei E. Fujimura et al.
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY (2010)
Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution
Phaik Lyn Oh et al.
ISME JOURNAL (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
From Structure to Function: the Ecology of Host-Associated Microbial Communities
Courtney J. Robinson et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2010)
Resistant Starches Types 2 and 4 Have Differential Effects on the Composition of the Fecal Microbiota in Human Subjects
Ines Martinez et al.
PLOS ONE (2010)
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
Andrew K. Benson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
CONCEPTUAL SYNTHESIS IN COMMUNITY ECOLOGY
Mark Vellend
QUARTERLY REVIEW OF BIOLOGY (2010)
Diet-Induced Metabolic Improvements in a Hamster Model of Hypercholesterolemia Are Strongly Linked to Alterations of the Gut Microbiota
Ines Martinez et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivaylo I. Ivanov et al.
CELL (2009)
The merging of community ecology and phylogenetic biology
Jeannine Cavender-Bares et al.
ECOLOGY LETTERS (2009)
Simultaneous inference in general parametric models
Torsten Hothorn et al.
BIOMETRICAL JOURNAL (2008)
IgA response to symbiotic bacteria as a mediator of gut homeostasis
Daniel A. Peterson et al.
CELL HOST & MICROBE (2007)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Share Paper
