4.8 Article

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

Michael E. Hughes et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

Nascent-Seq Indicates Widespread Cotranscriptional RNA Editing in Drosophila

Joseph Rodriguez et al.

MOLECULAR CELL (2012)

Article Biochemistry & Molecular Biology

Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse

Yevgenia L. Khodor et al.

Article Biochemistry & Molecular Biology

Promoter Elements Regulate Cytoplasmic mRNA Decay

Almog Bregman et al.

Article Biochemistry & Molecular Biology

Single-Molecule mRNA Decay Measurements Reveal Promoter-Regulated mRNA Stability in Yeast

Tatjana Trcek et al.

Article Biochemistry & Molecular Biology

Delay in Feedback Repression by Cryptochrome 1 Is Required for Circadian Clock Function

Maki Ukai-Tadenuma et al.

Review Biochemistry & Molecular Biology

Spotlight on post-transcriptional control in the circadian system

Dorothee Staiger et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2011)

Review Biochemistry & Molecular Biology

Posttranscriptional mechanisms in controlling eukaryotic circadian rhythms

Lin Zhang et al.

FEBS LETTERS (2011)

Article Cell Biology

Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila

Yevgenia L. Khodor et al.

GENES & DEVELOPMENT (2011)

Article Cell Biology

Post-transcriptional control of circadian rhythms

Shihoko Kojima et al.

JOURNAL OF CELL SCIENCE (2011)

Review Biochemistry & Molecular Biology

Molecular Mechanisms of Long Noncoding RNAs

Kevin C. Wang et al.

MOLECULAR CELL (2011)

Review Plant Sciences

RNA-based regulation in the plant circadian clock

Dorothee Staiger et al.

TRENDS IN PLANT SCIENCE (2011)

Article Biochemistry & Molecular Biology

Circadian Amplitude of Cryptochrome 1 Is Modulated by mRNA Stability Regulation via Cytoplasmic hnRNP D Oscillation

Kyung-Chul Woo et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

Fernando Carrillo Oesterreich et al.

MOLECULAR CELL (2010)

Article Biochemical Research Methods

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Joshua Z. Levin et al.

NATURE METHODS (2010)

Article Biochemical Research Methods

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

John W. Nicol et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Cell Biology

Integration of microRNA miR-122 in hepatic circadian gene expression

David Gatfield et al.

GENES & DEVELOPMENT (2009)

Review Genetics & Heredity

Long non-coding RNAs: insights into functions

Tim R. Mercer et al.

NATURE REVIEWS GENETICS (2009)

Article Biochemical Research Methods

ChIP-seq: Using high-throughput sequencing to discover protein-DNA interactions

Dominic Schmidt et al.

METHODS (2009)

Article Biochemistry & Molecular Biology

Mouse period 2 mRNA circadian oscillation is modulated by PTBmediated rhythmic mRNA degradation

Kyung-Chul Woo et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression

Christopher Vollmers et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Genetics & Heredity

The Genetic Signatures of Noncoding RNAs

John S. Mattick

PLOS GENETICS (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang et al.

GENOME BIOLOGY (2008)

Review Genetics & Heredity

RNA regulons: coordination of post-transcriptional events

Jack D. Keene

NATURE REVIEWS GENETICS (2007)

Review Biology

Molecular circadian rhythms in central and peripheral clocks in mammals

Hugues Dardente et al.

CHRONOBIOLOGY INTERNATIONAL (2007)

Review Biochemistry & Molecular Biology

Molecular components of the mammalian circadian clock

Caroline H. Ko et al.

HUMAN MOLECULAR GENETICS (2006)

Article Biotechnology & Applied Microbiology

GOToolBox: functional analysis of gene datasets based on Gene Ontology

D Martin et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Coordinated transcription of key pathways in the mouse by the circadian clock

S Panda et al.

Article Multidisciplinary Sciences

Extensive and divergent circadian gene expression in liver and heart

KF Storch et al.

NATURE (2002)

Article Biochemistry & Molecular Biology

Microarray analysis and organization of circadian gene expression Drosophila

MJ McDonald et al.

Article Biochemistry & Molecular Biology

Mop3 is an essential component of the master circadian pacemaker in mammals

MK Bunger et al.

Article Biochemistry & Molecular Biology

RNA degradation buffers asymmetries of transcription in Arabidopsis mitochondria

P Giegé et al.

EMBO REPORTS (2000)