Related references
Note: Only part of the references are listed.Control of Expression of the RNases J1 and J2 in Bacillus subtilis
Ailar Jamalli et al.
JOURNAL OF BACTERIOLOGY (2014)
Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'
Michael Kube et al.
JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY (2014)
The social fabric of the RNA degradosome
Katarzyna J. Bandyra et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2013)
Ribosome heterogeneity: another level of complexity in bacterial translation regulation
Konstantin Byrgazov et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
Small, Smaller, Smallest: The Origins and Evolution of Ancient Dual Symbioses in a Phloem-Feeding Insect
Gordon M. Bennett et al.
GENOME BIOLOGY AND EVOLUTION (2013)
GTPases involved in bacterial ribosome maturation
Simon Goto et al.
JOURNAL OF BIOCHEMISTRY (2013)
Evidence for Late Resolution of the AUX Codon Box in Evolution
Thomas E. Jones et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
How a CCA Sequence Protects Mature tRNAs and tRNA Precursors from Action of the Processing Enzyme RNase BN/RNase Z
Tanmay Dutta et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation
Asha Ivy Jacob et al.
MOLECULAR CELL (2013)
An updated metabolic view of the Bacillus subtilis 168 genome
Eugeni Belda et al.
MICROBIOLOGY-SGM (2013)
Selection of tRNA charging quality control mechanisms that increase mistranslation of the genetic code
Srujana S. Yadavalli et al.
NUCLEIC ACIDS RESEARCH (2013)
MODOMICS: a database of RNA modification pathways-2013 update
Magdalena A. Machnicka et al.
NUCLEIC ACIDS RESEARCH (2013)
Mutational analysis of the ribosome assembly GTPase RbgA provides insight into ribosome interaction and ribosome-stimulated GTPase activation
Megha Gulati et al.
NUCLEIC ACIDS RESEARCH (2013)
Leucine-specific domain modulates the aminoacylation and proofreading functional cycle of bacterial leucyl-tRNA synthetase
Wei Yan et al.
NUCLEIC ACIDS RESEARCH (2013)
Life without tRNAArg-adenosine deaminase TadA: evolutionary consequences of decoding the four CGN codons as arginine in Mycoplasmas and other Mollicutes
Shin-ichi Yokobori et al.
NUCLEIC ACIDS RESEARCH (2013)
Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Mycoplasma mobile
Takaaki Taniguchi et al.
NUCLEIC ACIDS RESEARCH (2013)
Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system
Leo C. K. Wan et al.
NUCLEIC ACIDS RESEARCH (2013)
Association of RNAs with Bacillus subtilis Hfq
Michael Dambach et al.
PLOS ONE (2013)
Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates
Jeremie Piton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
RNA-methyltransferase TrmA is a dual-specific enzyme responsible for C5-methylation of uridine in both tmRNA and tRNA
Ehsan Ranaei-Siadat et al.
RNA BIOLOGY (2013)
RNA helicases Diverse roles in prokaryotic response to abiotic stress
George W. Owttrim
RNA BIOLOGY (2013)
From essential to persistent genes: a functional approach to constructing synthetic life
Carlos G. Acevedo-Rocha et al.
TRENDS IN GENETICS (2013)
Biosynthesis and Function of Posttranscriptional Modifications of Transfer RNAs
Basma El Yacoubi et al.
ANNUAL REVIEW OF GENETICS, VOL 46 (2012)
The ribosome modulates the structural dynamics of the conserved GTPase HflX and triggers tight nucleotide binding
Jeffrey J. Fischer et al.
BIOCHIMIE (2012)
A Whole-Cell Computational Model Predicts Phenotype from Genotype
Jonathan R. Karr et al.
CELL (2012)
Structural aspects of mitochondrial translational apparatus
Rajendra K. Agrawal et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2012)
Inactivation of Ribosomal Protein Genes in Bacillus subtilis Reveals Importance of Each Ribosomal Protein for Cell Proliferation and Cell Differentiation
Genki Akanuma et al.
JOURNAL OF BACTERIOLOGY (2012)
Novel One-step Mechanism for tRNA 3′-End Maturation by the Exoribonuclease RNase R of Mycoplasma genitalium
Ravi K. Alluri et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Biosynthesis of Threonylcarbamoyl Adenosine (t6A), a Universal tRNA Nucleoside
Christopher Deutsch et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Dissection of the Network of Interactions That Links RNA Processing with Glycolysis in the Bacillus subtilis Degradosome
Joseph A. Newman et al.
JOURNAL OF MOLECULAR BIOLOGY (2012)
A Comprehensive Proteome of Mycoplasma genitalium
Noemi Parraga-Nino et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Concerted Action of the Ribosome and the Associated Chaperone Trigger Factor Confines Nascent Polypeptide Folding
Anja Hoffmann et al.
MOLECULAR CELL (2012)
RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases
Martin Lehnik-Habrink et al.
MOLECULAR MICROBIOLOGY (2012)
Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells
Somenath Bakshi et al.
MOLECULAR MICROBIOLOGY (2012)
Lys34 of translation elongation factor EF-P is hydroxylated by YfcM
Lauri Peil et al.
NATURE CHEMICAL BIOLOGY (2012)
One core, two shells: bacterial and eukaryotic ribosomes
Sergey Melnikov et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Phylogenomics of Prokaryotic Ribosomal Proteins
Natalya Yutin et al.
PLOS ONE (2012)
Drift-barrier hypothesis and mutation-rate evolution
Way Sung et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Characterization of NrnA homologs from Mycobacterium tuberculosis and Mycoplasma pneumoniae
Guillaume Postic et al.
RNA (2012)
DnaK Functions as a Central Hub in the E. coli Chaperone Network
Giulia Calloni et al.
CELL REPORTS (2012)
Ultrafast Evolution and Loss of CRISPRs Following a Host Shift in a Novel Wildlife Pathogen, Mycoplasma gallisepticum
Nigel F. Delaney et al.
PLOS GENETICS (2012)
SYNTHETIC GENOMICS AND THE CONSTRUCTION OF A SYNTHETIC BACTERIAL CELL
John I. Glass
PERSPECTIVES IN BIOLOGY AND MEDICINE (2012)
Assembly of Bacterial Ribosomes
Zahra Shajani et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 80 (2011)
Gene gain and loss events in Rickettsia and Orientia species
Kalliopi Georgiades et al.
BIOLOGY DIRECT (2011)
Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes
Xiaobin Zheng et al.
BMC GENOMICS (2011)
Bacterial genomes: from regulatory complexity to engineering
Rotem Sorek et al.
CURRENT OPINION IN MICROBIOLOGY (2011)
RsgA releases RbfA from 30S ribosome during a late stage of ribosome biosynthesis
Simon Goto et al.
EMBO JOURNAL (2011)
Bacillus subtilis MazF-bs (EndoA) is a UACAU-specific mRNA interferase
Jung-Ho Park et al.
FEBS LETTERS (2011)
Mechanistic characterization of sulfur transfer from cysteine desulfurase SufS to the iron-sulfur scaffold SufU in Bacillus subtilis
Alexander G. Albrecht et al.
FEBS LETTERS (2011)
Systematic Chromosomal Deletion of Bacterial Ribosomal Protein Genes
Shinichiro Shoji et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
Phylogenetic Distribution and Evolutionary History of Bacterial DEAD-Box Proteins
Varinia Lopez-Ramirez et al.
JOURNAL OF MOLECULAR EVOLUTION (2011)
A Proteomic and Transcriptomic Approach Reveals New Insight into β-methylthiolation of Escherichia coli Ribosomal Protein S12
Michael Brad Strader et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
An RNA Pyrophosphohydrolase Triggers 5′-Exonucleolytic Degradation of mRNA in Bacillus subtilis
Jamie Richards et al.
MOLECULAR CELL (2011)
Quantification of mRNA and protein and integration with protein turnover in a bacterium
Tobias Maier et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
The tRNA synthetase paralog PoxA modifies elongation factor-P with (R)-β-lysine
Herve Roy et al.
NATURE CHEMICAL BIOLOGY (2011)
The Universally Conserved Prokaryotic GTPases
Natalie Verstraeten et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)
EcoCyc: a comprehensive database of Escherichia coli biology
Ingrid M. Keseler et al.
NUCLEIC ACIDS RESEARCH (2011)
CDD: a Conserved Domain Database for the functional annotation of proteins
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2011)
A single methyltransferase YefA (RlmCD) catalyses both m5U747 and m5U1939 modifications in Bacillus subtilis 23S rRNA
Benoit Desmolaize et al.
NUCLEIC ACIDS RESEARCH (2011)
The RelA/SpoT Homolog (RSH) Superfamily: Distribution and Functional Evolution of ppGpp Synthetases and Hydrolases across the Tree of Life
Gemma C. Atkinson et al.
PLOS ONE (2011)
Rational design of an evolutionary precursor of glutaminyl-tRNA synthetase
Patrick O'Donoghue et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Naturally occurring aminoacyl-tRNA synthetases editing-domain mutations that cause mistranslation in Mycoplasma parasites
Li Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3′ end of 16S rRNA
Chao Tu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Elongation factor 4 (EF4/LepA) accelerates protein synthesis at increased Mg2+ concentrations
Markus Pech et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The proteome of Mycoplasma pneumoniae, a supposedly simple cell
Ina Catrein et al.
PROTEOMICS (2011)
Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor
Ahmad Jomaa et al.
RNA (2011)
The polypeptide tunnel exit of the mitochondrial ribosome is tailored to meet the specific requirements of the organelle
Steffi Gruschke et al.
BIOESSAYS (2010)
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
Miklos Csuroes
BIOINFORMATICS (2010)
Fewer essential genes in mycoplasmas than previous studies suggest
Kevin Dybvig et al.
FEMS MICROBIOLOGY LETTERS (2010)
The Effect of Ribosome Assembly Cofactors on In Vitro 30S Subunit Reconstitution
Anne E. Bunner et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
Manolo Gouy et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Deciphering the Catalytic Machinery in 30S Ribosome Assembly GTPase YqeH
Baskaran Anand et al.
PLOS ONE (2010)
Cell-specific differences in the requirements for translation quality control
Noah M. Reynolds et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Crowding and function reunite
Gary J. Pielak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Dynamic evolution of translation initiation mechanisms in prokaryotes
So Nakagawa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome
Daniel G. Gibson et al.
SCIENCE (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
A Novel Domain in Translational GTPase BipA Mediates Interaction with the 70S Ribosome and Influences GTP Hydrolysis
Megan A. deLivron et al.
BIOCHEMISTRY (2009)
The many levels of control on bacterial selenoprotein synthesis
Satoko Yoshizawa et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2009)
Widespread Distribution of Cell Defense against D-Aminoacyl-tRNAs
Sandra Wydau et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
The evolutionary consequences of erroneous protein synthesis
D. Allan Drummond et al.
NATURE REVIEWS GENETICS (2009)
CpgA, EF-Tu and the stressosome protein YezB are substrates of the Ser/Thr kinase/phosphatase couple, PrkC/PrpC, in Bacillus subtilis
Cedric Absalon et al.
MICROBIOLOGY-SGM (2009)
Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis
Ming Fang et al.
NUCLEIC ACIDS RESEARCH (2009)
Proteome Organization in a Genome-Reduced Bacterium
Sebastian Kuehner et al.
SCIENCE (2009)
Impact of Genome Reduction on Bacterial Metabolism and Its Regulation
Eva Yus et al.
SCIENCE (2009)
Transcriptome Complexity in a Genome-Reduced Bacterium
Marc Gueell et al.
SCIENCE (2009)
Life on Arginine for Mycoplasma hominis: Clues from Its Minimal Genome and Comparison with Other Human Urogenital Mycoplasmas
Sabine Pereyre et al.
PLOS GENETICS (2009)
Iron-Sulfur (Fe/S) Protein Biogenesis: Phylogenomic and Genetic Studies of A-Type Carriers
Daniel Vinella et al.
PLOS GENETICS (2009)
Mycoplasma gallisepticum as the first analyzed bacterium in which RNA is not polyadenylated
Victoria Portnoy et al.
FEMS MICROBIOLOGY LETTERS (2008)
Gene content of LUCA, the last universal common ancestor
Arcady Mushegian
FRONTIERS IN BIOSCIENCE-LANDMARK (2008)
Genome of Mycoplasma arthritidis
Kevin Dybvig et al.
INFECTION AND IMMUNITY (2008)
Large-scale transposon mutagenesis of Mycoplasma pulmonis
Christopher T. French et al.
MOLECULAR MICROBIOLOGY (2008)
From one amino acid to another: tRNA-dependent amino acid biosynthesis
Kelly Sheppard et al.
NUCLEIC ACIDS RESEARCH (2008)
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
A. Dereeper et al.
NUCLEIC ACIDS RESEARCH (2008)
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
Eugene V. Koonin et al.
NUCLEIC ACIDS RESEARCH (2008)
Aminoacyl-tRNA synthetase complexes: molecular multitasking revealed
Corinne D. Hausmann et al.
FEMS MICROBIOLOGY REVIEWS (2008)
Evolution of mollicutes:: down a bumpy road with twists and turns
Pascal Sirand-Pugnet et al.
RESEARCH IN MICROBIOLOGY (2007)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
Reconstructing the evolution of the mitochondrial ribosomal proteome
Paulien Smits et al.
NUCLEIC ACIDS RESEARCH (2007)
The weird and wonderful world of bacterial ribosome regulation
Daniel N. Wilson et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2007)
Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome
Pascal Sirand-Pugnet et al.
PLOS GENETICS (2007)
Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli
Mikhail Bubunenko et al.
JOURNAL OF BACTERIOLOGY (2007)
Ribonuclease revisited: structural insights into ribonuclease III family enzymes
Ian J. MacRae et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2007)
Dynamics of reductive genome evolution in mitochondria and obligate intracellular microbes
Amit N. Khachane et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
Gerard Talavera et al.
SYSTEMATIC BIOLOGY (2007)
Bacterial RNase P: a new view of an ancient enzyme
Alexei V. Kazantsev et al.
NATURE REVIEWS MICROBIOLOGY (2006)
An integrated view of protein evolution
C Pál et al.
NATURE REVIEWS GENETICS (2006)
Toward automatic reconstruction of a highly resolved tree of life
FD Ciccarelli et al.
SCIENCE (2006)
Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex
T Numata et al.
STRUCTURE (2006)
Essential genes of a minimal bacterium
JI Glass et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Towards synthesis of a minimal cell
Anthony C. Forster et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
How essential are nonessential genes?
G Fang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Cys-tRNAPro editing by Haemophilus influenzae YbaK via a novel synthetase • YbaK • tRNA ternary complex
S An et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Swine and poultry pathogens:: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae
ATR Vasconcelos et al.
JOURNAL OF BACTERIOLOGY (2005)
Evolution of different oligorneric glycyl-tRNA synthetases
SN Tang et al.
FEBS LETTERS (2005)
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek et al.
NUCLEIC ACIDS RESEARCH (2005)
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
PD Karp et al.
NUCLEIC ACIDS RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Determination of the core of a minimal bacterial gene set
R Gil et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)
Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma
K Oshima et al.
NATURE GENETICS (2004)
MolliGen, a database dedicated to the comparative genomics of Mollicutes
A Barre et al.
NUCLEIC ACIDS RESEARCH (2004)
RNA processing and degradation in Bacillus subtilis
C Condon
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2003)
Essential Bacillus subtilis genes
K Kobayashi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Comparative genomics, minimal gene-sets and the last universal common ancestor
EV Koonin
NATURE REVIEWS MICROBIOLOGY (2003)
Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale
O Lecompte et al.
NUCLEIC ACIDS RESEARCH (2002)
Bacillus subtilis YhaM, a member of a new family of 3′-to-5′ exonucleases in gram-positive bacteria
IA Oussenko et al.
JOURNAL OF BACTERIOLOGY (2002)
Endosymbiotic bacteria -: GroEL buffers against deleterious mutations
MA Fares et al.
NATURE (2002)
NMR solution structure and dynamics of the peptidylprolyl cis-trans lsomerase domain of the trigger factor from mycoplasma genitalium compared to FK506-binding protein
M Vogtherr et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
The hemK gene in Escherichia coli encodes the N5-glutamine methyltransferase that modifies peptide release factors
V Heurgué-Hamard et al.
EMBO JOURNAL (2002)
Posttranscriptional modifications in the A-loop of 23S rRNAs from selected archaea and eubacteria
MA Hansen et al.
RNA (2002)
Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA
AJ Herr et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Prolyl isomerases in a minimal cell -: Catalysis of protein folding by trigger factor from Mycoplasma genitalium
N Bang et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2000)
Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
CR Woese et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)