Related references
Note: Only part of the references are listed.Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
Byung-Kwan Cho et al.
BMC BIOLOGY (2014)
The Transcription Factor Titration Effect Dictates Level of Gene Expression
Robert C. Brewster et al.
CELL (2014)
Widespread suppression of intragenic transcription initiation by H-NS
Shivani S. Singh et al.
GENES & DEVELOPMENT (2014)
Identification of the Alternative Sigma Factor SigX Regulon and Its Implications for Pseudomonas aeruginosa Pathogenicity
Andrea Blanka et al.
JOURNAL OF BACTERIOLOGY (2014)
Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon
Anne M. Stringer et al.
JOURNAL OF BACTERIOLOGY (2014)
Lies and deception in bacterial gene regulation: the roles of nucleic acid decoys
Yvonne Goepel et al.
MOLECULAR MICROBIOLOGY (2014)
Non-canonical protein-DNA interactions identified by ChIP are not artifacts
Richard P. Bonocora et al.
BMC GENOMICS (2013)
Mutations upregulating the flhDC operon of Escherichia coli K-12
Changhan Lee et al.
JOURNAL OF MICROBIOLOGY (2013)
CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage
Alexander V. Yakhnin et al.
MOLECULAR MICROBIOLOGY (2013)
The Mycobacterium tuberculosis regulatory network and hypoxia
James E. Galagan et al.
NATURE (2013)
RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
Heladia Salgado et al.
NUCLEIC ACIDS RESEARCH (2013)
Computational analysis of bacterial RNA-Seq data
Ryan McClure et al.
NUCLEIC ACIDS RESEARCH (2013)
Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins
Teytelmana B. Leonid et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Genome-scale Analysis of Escherichia coli FNR Reveals Complex Features of Transcription Factor Binding
Kevin S. Myers et al.
PLOS GENETICS (2013)
Rho and NusG suppress pervasive antisense transcription in Escherichia coli
Jason M. Peters et al.
GENES & DEVELOPMENT (2012)
Genome-Wide Definition of the SigF Regulon in Mycobacterium tuberculosis
Ruben C. Hartkoorn et al.
JOURNAL OF BACTERIOLOGY (2012)
A complex network of small non-coding RNAs regulate motility in Escherichia coli
Nicholas De Lay et al.
MOLECULAR MICROBIOLOGY (2012)
A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli
Maureen K. Thomason et al.
MOLECULAR MICROBIOLOGY (2012)
The global repressor FliZ antagonizes gene expression by ΣS-containing RNA polymerase due to overlapping DNA binding specificity
Christina Pesavento et al.
NUCLEIC ACIDS RESEARCH (2012)
Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52
Tao G. Dong et al.
NUCLEIC ACIDS RESEARCH (2012)
Inferring direct DNA binding from ChIP-seq
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2012)
FRUIT, a Scar-Free System for Targeted Chromosomal Mutagenesis, Epitope Tagging, and Promoter Replacement in Escherichia coli and Salmonella enterica
Anne M. Stringer et al.
PLOS ONE (2012)
Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling
Donghyuk Kim et al.
PLOS GENETICS (2012)
IS5 inserts upstream of the master motility operon flhDC in a quasi-Lamarckian way
Xiaoxue Wang et al.
ISME JOURNAL (2011)
Refining the Binding of the Escherichia coli Flagellar Master Regulator, FlhD4C2, on a Base-Specific Level
Yi-Ying Lee et al.
JOURNAL OF BACTERIOLOGY (2011)
Multiple Promoters Contribute to Swarming and the Coordination of Transcription with Flagellar Assembly in Salmonella
Christopher E. Wozniak et al.
JOURNAL OF BACTERIOLOGY (2010)
Activation of σ28-dependent transcription in Escherichia coli by the cyclic AMP receptor protein requires an unusual promoter organization
Kerry Hollands et al.
MOLECULAR MICROBIOLOGY (2010)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Analyzing real-time PCR data by the comparative C-T method
Thomas D. Schmittgen et al.
NATURE PROTOCOLS (2008)
Coordinating assembly of a bacterial macromolecular machine
Fabienne F. V. Chevance et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Genomic analysis of protein-DNA interactions in bacteria: insights into transcription and chromosome organization
Joseph T. Wade et al.
MOLECULAR MICROBIOLOGY (2007)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
Adaptation in bacterial flagellar and motility systems: from regulon members to 'foraging'-like behavior in E-coli
Kai Zhao et al.
NUCLEIC ACIDS RESEARCH (2007)
In silico prediction and functional validation of σ28-regulated genes in Chlamydia and Escherichia coli
Hilda Hiu Yin Yu et al.
JOURNAL OF BACTERIOLOGY (2006)
Transcriptional regulatory networks in bacteria: from input signals to output responses
Aswin S. N. Seshasayee et al.
CURRENT OPINION IN MICROBIOLOGY (2006)
Extensive functional overlap between σ factors in Escherichia coli
Joseph T. Wade et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)
Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription
SY Wang et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
Binding and transcriptional activation of non-flagellar genes by the Escherichia coli flagellar master regulator FlhD2C2
GP Stafford et al.
MICROBIOLOGY-SGM (2005)
Using a quantitative blueprint to reprogram the dynamics of the flagella gene network
S Kalir et al.
CELL (2004)
Increased motility of Escherichia coli by insertion sequence element integration into the regulatory region of the flhD operon
CS Barker et al.
JOURNAL OF BACTERIOLOGY (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Just-in-time transcription program in metabolic pathways
A Zaslaver et al.
NATURE GENETICS (2004)
Sigma70 promoters in Escherichia coli:: Specific transcription in dense regions of overlapping promoter-like signals
AM Huerta et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Structure and function of the feed-forward loop network motif
S Mangan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Regulation cascade of flagellar expression in Gram-negative bacteria
OA Soutourina et al.
FEMS MICROBIOLOGY REVIEWS (2003)
FlhD/FlhC is a regulator of anaerobic respiration and the Entner-Doudoroff pathway through induction of the methyl-accepting chemotaxis protein Aer
BM Pruss et al.
JOURNAL OF BACTERIOLOGY (2003)
LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli
D Lehnen et al.
MOLECULAR MICROBIOLOGY (2002)
Quorum sensing Escherichia coli regulators B and C (QseBC):: a novel two-component regulatory system involved in the regulation of flagella and motility by quorum sensing in E-coli
V Sperandio et al.
MOLECULAR MICROBIOLOGY (2002)
Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria
S Kalir et al.
SCIENCE (2001)
Extensive alanine scanning reveals protein-protein and protein-DNA interaction surfaces in the global regulator FlhD from Escherichia coli
A Campos et al.
MOLECULAR MICROBIOLOGY (2001)
Coupling of flagellar gene expression to flagellar assembly in salmonella enterica serovar typhimurium and Escherichia coli
GS Chilcott et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)
Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli
M Ko et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
KA Datsenko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Share Paper
