4.6 Article

An Interspecific Fungal Hybrid Reveals Cross-Kingdom Rules for Allopolyploid Gene Expression Patterns

Related references

Note: Only part of the references are listed.
Review Genetics & Heredity

Genomic and epigenetic insights into the molecular bases of heterosis

Z. Jeffrey Chen

NATURE REVIEWS GENETICS (2013)

Article Multidisciplinary Sciences

Following Gene Duplication, Paralog Interference Constrains Transcriptional Circuit Evolution

Christopher R. Baker et al.

SCIENCE (2013)

Review Genetics & Heredity

Saccharomyces diversity and evolution: a budding model genus

Chris Todd Hittinger

TRENDS IN GENETICS (2013)

Article Food Science & Technology

Currencies of Mutualisms: Sources of Alkaloid Genes in Vertically Transmitted Epichloae

Christopher L. Schardl et al.

TOXINS (2013)

Article Plant Sciences

NEXT-GENERATION SEQUENCING AND GENOME EVOLUTION IN ALLOPOLYPLOIDS

Richard J. A. Buggs et al.

AMERICAN JOURNAL OF BOTANY (2012)

Article Biochemistry & Molecular Biology

Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin

Richard J. A. Buggs et al.

CURRENT BIOLOGY (2012)

Article Evolutionary Biology

Homeologous Gene Expression in Response to Growing Temperature in a Recent Allopolyploid (Coffea arabica L.)

Marie-Christine Combes et al.

JOURNAL OF HEREDITY (2012)

Letter Plant Sciences

Homoeolog expression bias and expression level dominance in allopolyploids

C. E. Grover et al.

NEW PHYTOLOGIST (2012)

Article Multidisciplinary Sciences

Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae)

Michael Chester et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Transcriptomic Shock Generates Evolutionary Novelty in a Newly Formed, Natural Allopolyploid Plant

Richard J. A. Buggs et al.

CURRENT BIOLOGY (2011)

Review Zoology

Genome duplication in amphibians and fish: an extended synthesis

B. K. Mable et al.

JOURNAL OF ZOOLOGY (2011)

Article Multidisciplinary Sciences

Ancestral polyploidy in seed plants and angiosperms

Yuannian Jiao et al.

NATURE (2011)

Letter Biotechnology & Applied Microbiology

Integrative genomics viewer

James T. Robinson et al.

NATURE BIOTECHNOLOGY (2011)

Article Multidisciplinary Sciences

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

James C. Schnable et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Plant Sciences

THE EPICHLOAE, SYMBIONTS OF THE GRASS SUBFAMILY POOIDEAE

Christopher L. Schardl

ANNALS OF THE MISSOURI BOTANICAL GARDEN (2010)

Article Biochemical Research Methods

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

Likun Wang et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

Murray P. Cox et al.

BMC BIOINFORMATICS (2010)

Article Plant Sciences

Mobilization of retrotransposons in synthetic allotetraploid tobacco

M. Petit et al.

NEW PHYTOLOGIST (2010)

Article Biochemistry & Molecular Biology

Heterosis

James A. Birchler et al.

PLANT CELL (2010)

Review Biochemistry & Molecular Biology

Exploring molecular signaling in plant-fungal symbioses using high throughput RNA sequencing

Murray P. Cox et al.

PLANT SIGNALING & BEHAVIOR (2010)

Review Plant Sciences

The Role of Hybridization in Plant Speciation

Pamela S. Soltis et al.

ANNUAL REVIEW OF PLANT BIOLOGY (2009)

Article Biology

Genomic expression dominance in allopolyploids

Ryan A. Rapp et al.

BMC BIOLOGY (2009)

Article Multidisciplinary Sciences

A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation

Itay Tirosh et al.

SCIENCE (2009)

Review Genetics & Heredity

Evolutionary Genetics of Genome Merger and Doubling in Plants

Jeff J. Doyle et al.

ANNUAL REVIEW OF GENETICS (2008)

Review Biochemistry & Molecular Biology

Genomic clues to the evolutionary success of review polyploid plants

Matthew J. Hegarty et al.

CURRENT BIOLOGY (2008)

Article Cell Biology

Consequences of genome duplication

Marie Semon et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2007)

Article Biochemistry & Molecular Biology

Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype

Robert T. Gaeta et al.

PLANT CELL (2007)

Article Multidisciplinary Sciences

The medaka draft genome and insights into vertebrate genome evolution

Masahiro Kasahara et al.

NATURE (2007)

Article Evolutionary Biology

Evolution of duplicate gene expression in polyploid and hybrid plants

Keith L. Adams

JOURNAL OF HEREDITY (2007)

Article Multidisciplinary Sciences

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

Jean-Marc Aury et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication

Matthew J. Hegarty et al.

CURRENT BIOLOGY (2006)

Review Biochemistry & Molecular Biology

Mechanisms of genomic rearrangements and gene expression changes in plant polyploids

ZJ Chen et al.

BIOESSAYS (2006)

Article Genetics & Heredity

Novel patterns of gene expression in polyploid plants

KL Adams et al.

TRENDS IN GENETICS (2005)

Article Multidisciplinary Sciences

Evolutionary changes in cis and trans gene regulation

PJ Wittkopp et al.

NATURE (2004)

Article Biochemistry & Molecular Biology

Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses

CD Moon et al.

MOLECULAR ECOLOGY (2004)

Article Multidisciplinary Sciences

Statistical significance for genomewide studies

JD Storey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Allopolyploidy alters gene expression in the highly stable hexaploid wheat

P He et al.

PLANT MOLECULAR BIOLOGY (2003)

Review Genetics & Heredity

Understanding mechanisms of novel gene expression in polyploids

TC Osborn et al.

TRENDS IN GENETICS (2003)

Article Biochemistry & Molecular Biology

Estimation of divergence times for major lineages of primate species

GV Glazko et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Review Biochemistry & Molecular Biology

Interspecific hybridization in plant-associated fungi and oomycetes: a review

CL Schardl et al.

MOLECULAR ECOLOGY (2003)

Article Genetics & Heredity

Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids

NC Riddle et al.

TRENDS IN GENETICS (2003)

Letter Biochemistry & Molecular Biology

Estimation of nucleotide substitution rates in eurotiomycete fungi

T Kasuga et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Biochemistry & Molecular Biology

Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica CE Hubbard (Poaceae)

A Baumel et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Plant Sciences

Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae)

U Peintner et al.

AMERICAN JOURNAL OF BOTANY (2001)