Related references
Note: Only part of the references are listed.Mapping cis- and trans-regulatory effects across multiple tissues in twins
Elin Grundberg et al.
NATURE GENETICS (2012)
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
Oliver Stegle et al.
NATURE PROTOCOLS (2012)
Deep-Sequencing Protocols Influence the Results Obtained in Small-RNA Sequencing
Joern Toedling et al.
PLOS ONE (2012)
Unraveling the Regulatory Mechanisms Underlying Tissue-Dependent Genetic Variation of Gene Expression
Jingyuan Fu et al.
PLOS GENETICS (2012)
miR-29 Is a Major Regulator of Genes Associated with Pulmonary Fibrosis
Leah Cushing et al.
AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY (2011)
Identification of miRNomes in Human Liver and Hepatocellular Carcinoma Reveals miR-199a/b-3p as Therapeutic Target for Hepatocellular Carcinoma
Jin Hou et al.
CANCER CELL (2011)
miR-30b/30d Regulation of GaINAc Transferases Enhances Invasion and Immunosuppression during Metastasis
Avital Gaziel-Sovran et al.
CANCER CELL (2011)
MicroRNA evolution by arm switching
Sam Griffiths-Jones et al.
EMBO REPORTS (2011)
Identification of cis- and trans- regulatory variation modulating microRNA expression levels in human fibroblasts
Christelle Borel et al.
GENOME RESEARCH (2011)
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
Stacia K. Wyman et al.
GENOME RESEARCH (2011)
Barcoding bias in high-throughput multiplex sequencing of miRNA
Shahar Alon et al.
GENOME RESEARCH (2011)
miR-29a and miR-29b Contribute to Pancreatic β-Cell-Specific Silencing of Monocarboxylate Transporter 1 (Mct1)
Timothy J. Pullen et al.
MOLECULAR AND CELLULAR BIOLOGY (2011)
Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia
D. Schotte et al.
LEUKEMIA (2011)
A synonymous variant in IRGM alters a binding site for miR-196 and causes deregulation of IRGM-dependent xenophagy in Crohn's disease
Patrick Brest et al.
NATURE GENETICS (2011)
Identification of an imprinted master trans regulator at the KLF14 locus related to multiple metabolic phenotypes
Kerrin S. Small et al.
NATURE GENETICS (2011)
Low-bias, strand-specific transcriptome Illumina sequencing by on-flowcell reverse transcription (FRT-seq)
Lira Mamanova et al.
NATURE PROTOCOLS (2011)
Small RNA sorting: matchmaking for Argonautes
Benjamin Czech et al.
NATURE REVIEWS GENETICS (2011)
Non-coding RNAs in human disease
Manel Esteller
NATURE REVIEWS GENETICS (2011)
Ensembl 2011
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2011)
ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments
Helen Parkinson et al.
NUCLEIC ACIDS RESEARCH (2011)
Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs
Markus Brameier et al.
NUCLEIC ACIDS RESEARCH (2011)
NCBI GEO: archive for functional genomics data sets-10 years on
Tanya Barrett et al.
NUCLEIC ACIDS RESEARCH (2011)
miRBase: integrating microRNA annotation and deep-sequencing data
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2011)
The UCSC Genome Browser database: update 2011
Pauline A. Fujita et al.
NUCLEIC ACIDS RESEARCH (2011)
g:Profiler-a web server for functional interpretation of gene lists (2011 update)
Jueri Reimand et al.
NUCLEIC ACIDS RESEARCH (2011)
The Impact of miRNA Target Sites in Coding Sequences and in 3′UTRs
Zhuo Fang et al.
PLOS ONE (2011)
MicroRNA Expression in Abdominal and Gluteal Adipose Tissue Is Associated with mRNA Expression Levels and Partly Genetically Driven
Mattias Rantalainen et al.
PLOS ONE (2011)
Quantitative Bias in Illumina TruSeq and a Novel Post Amplification Barcoding Strategy for Multiplexed DNA and Small RNA Deep Sequencing
Filip Van Nieuwerburgh et al.
PLOS ONE (2011)
PPARα Is Regulated by miR-21 and miR-27b in Human Liver
Katsuhiko Kida et al.
PHARMACEUTICAL RESEARCH (2011)
Animal snoRNAs and scaRNAs with exceptional structures
Manja Marz et al.
RNA BIOLOGY (2011)
Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
M. Bryan Warf et al.
RNA (2011)
Joint Genetic Analysis of Gene Expression Data with Inferred Cellular Phenotypes
Leopold Parts et al.
PLOS GENETICS (2011)
The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study
Alexandra C. Nica et al.
PLOS GENETICS (2011)
Trans-eQTLs Reveal That Independent Genetic Variants Associated with a Complex Phenotype Converge on Intermediate Genes, with a Major Role for the HLA
Rudolf S. N. Fehrmann et al.
PLOS GENETICS (2011)
MapMi: automated mapping of microRNA loci
Jose Afonso Guerra-Assuncao et al.
BMC BIOINFORMATICS (2010)
Global microRNA expression profiles in insulin target tissues in a spontaneous rat model of type 2 diabetes
B. M. Herrera et al.
DIABETOLOGIA (2010)
Regulation of MicroRNA Expression and Abundance during Lymphopoiesis
Stefan Kuchen et al.
IMMUNITY (2010)
miR-451 enhances erythroid differentiation in K562 cells
Hana Bruchova-Votavova et al.
LEUKEMIA & LYMPHOMA (2010)
Pathogenic LRRK2 negatively regulates microRNA-mediated translational repression
Stephan Gehrke et al.
NATURE (2010)
Widespread transcription at neuronal activity-regulated enhancers
Tae-Kyung Kim et al.
NATURE (2010)
Biological, clinical and population relevance of 95 loci for blood lipids
Tanya M. Teslovich et al.
NATURE (2010)
A global map of human gene expression
Margus Lukk et al.
NATURE BIOTECHNOLOGY (2010)
miR-145-dependent targeting of Junctional Adhesion Molecule A and modulation of fascin expression are associated with reduced breast cancer cell motility and invasiveness
M. Goette et al.
ONCOGENE (2010)
Characterization of the Melanoma miRNAome by Deep Sequencing
Mitchell S. Stark et al.
PLOS ONE (2010)
Expression of Adipose MicroRNAs Is Sensitive to Dietary Conjugated Linoleic Acid Treatment in Mice
Pilar Parra et al.
PLOS ONE (2010)
Polymorphic Cis- and Trans-Regulation of Human Gene Expression
Vivian G. Cheung et al.
PLOS BIOLOGY (2010)
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies
Oliver Stegle et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations
Alexandra C. Nica et al.
PLOS GENETICS (2010)
Evidence for natural antisense transcript-mediated inhibition of microRNA function
Mohammad Ali Faghihi et al.
GENOME BIOLOGY (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
Martin Morgan et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
MicroRNAs: Target Recognition and Regulatory Functions
David P. Bartel
CELL (2009)
Most mammalian mRNAs are conserved targets of microRNAs
Robin C. Friedman et al.
GENOME RESEARCH (2009)
Repertoire and evolution of miRNA genes in four divergent nematode species
Elzo de Wit et al.
GENOME RESEARCH (2009)
Regulation of Epidermal Growth Factor Receptor Signaling in Human Cancer Cells by MicroRNA-7
Rebecca J. Webster et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Antagomir-mediated silencing of endothelial cell specific microRNA-126 impairs ischemia-induced angiogenesis
Coen van Solingen et al.
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE (2009)
miR-93, miR-98, and miR-197 Regulate Expression of Tumor Suppressor Gene FUS1
Liqin Du et al.
MOLECULAR CANCER RESEARCH (2009)
Many roads to maturity: microRNA biogenesis pathways and their regulation
Julia Winter et al.
NATURE CELL BIOLOGY (2009)
Variants in MTNR1B influence fasting glucose levels
Inga Prokopenko et al.
NATURE GENETICS (2009)
Biogenesis of small RNAs in animals
V. Narry Kim et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
The database of experimentally supported targets: a functional update of TarBase
Giorgos L. Papadopoulos et al.
NUCLEIC ACIDS RESEARCH (2009)
miRecords: an integrated resource for microRNA-target interactions
Feifei Xiao et al.
NUCLEIC ACIDS RESEARCH (2009)
MicroRNA Expression in Human Omental and Subcutaneous Adipose Tissue
Nora Kloeting et al.
PLOS ONE (2009)
Small RNAs derived from snoRNAs
Ryan J. Taft et al.
RNA (2009)
Genome-Wide Association Scan Meta-Analysis Identifies Three Loci Influencing Adiposity and Fat Distribution
Cecilia M. Lindgren et al.
PLOS GENETICS (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Up-regulated expression of microRNA-143 in association with obesity in adipose tissue of mice fed high-fat diet
Rieko Takanabe et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)
Role of miRNA-146a in the regulation of the innate immune response and cancer
Andrew E. Williams et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2008)
MicroRNA miR-24 inhibits erythropoiesis by targeting activin type I receptor ALK4
Qiang Wang et al.
BLOOD (2008)
Quantitative linkage analysis for pancreatic B-cell function and insulin resistance in a large twin cohort
Mario Falchi et al.
DIABETES (2008)
Chromatin structure analyses identify miRNA promoters
Fatih Ozsolak et al.
GENES & DEVELOPMENT (2008)
Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity
Natalia J. Martinez et al.
GENOME RESEARCH (2008)
Relation of birth weight, body mass index, and change in size from birth to adulthood to insulin resistance in a female twin cohort
Paula M. L. Skidmore et al.
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM (2008)
Rapid changes in microRNA-146a expression negatively regulate the IL-1β-induced inflammatory response in hunan lung alveolar epithelial cells
Mark M. Perry et al.
JOURNAL OF IMMUNOLOGY (2008)
Variations in DNA elucidate molecular networks that cause disease
Yanqing Chen et al.
NATURE (2008)
Genetics of gene expression and its effect on disease
Valur Emilsson et al.
NATURE (2008)
Prader-Willi phenotype caused by paternal deficiency for the HBII-85C/D box small nucleolar RNA cluster
Trilochan Sahoo et al.
NATURE GENETICS (2008)
Detecting microRNA binding and siRNA off-target effects from expression data
Stijn van Dongen et al.
NATURE METHODS (2008)
The regulatory activity of microRNA☆ species has substantial influence on microRNA and 3′ UTR evolution
Katsutomo Okamura et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Self Containment, a Property of Modular RNA Structures, Distinguishes microRNAs
Miler T. Lee et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
MicroRNA-378 promotes cell survival, tumor growth, and angiogenesis by targeting SuFu and Fus-1 expression
Daniel Y. Lee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
J. Graham Ruby et al.
GENOME RESEARCH (2007)
Genomic analysis of human microRNA transcripts
Harpreet Kaur Saini et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Overexpression of micro ribonucleic acid 29, highly up-regulated in diabetic rats, leads to insulin resistance in 3T3-L1 adipocytes
Aibin He et al.
MOLECULAR ENDOCRINOLOGY (2007)
Population genomics of human gene expression
Barbara E. Stranger et al.
NATURE GENETICS (2007)
Capturing heterogeneity in gene expression studies by surrogate variable analysis
Jeffrey T. Leek et al.
PLOS GENETICS (2007)
GEOquery: a bridge between the gene expression omnibus (GEO) and BioConductor
Davis Sean et al.
BIOINFORMATICS (2007)
A mammalian microRNA expression atlas based on small RNA library sequencing
Pablo Landgraf et al.
CELL (2007)
Characterization of microRNA expression profiles in normal human tissues
Yu Liang et al.
BMC GENOMICS (2007)
Impaired microRNA processing enhances cellular transformation and tumorigenesis
Madhu S. Kumar et al.
NATURE GENETICS (2007)
Human polymorphism at microRNAs and microRNA target sites
Matthew A. Saunders et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The UK Adult Twin Registry (TwinsUK)
Tim D. Spector et al.
TWIN RESEARCH AND HUMAN GENETICS (2006)
Non-coding RNA
JS Mattick et al.
HUMAN MOLECULAR GENETICS (2006)
The RIN: an RNA integrity number for assigning integrity values to RNA measurements
A Schroeder et al.
BMC MOLECULAR BIOLOGY (2006)
MicroRNA-143 regulates adipocyte differentiation
C Esau et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Micrornas: Small RNAs with a big role in gene regulation
L He et al.
NATURE REVIEWS GENETICS (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
T Kiss
CELL (2002)
Identification of novel genes coding for small expressed RNAs
M Lagos-Quintana et al.
SCIENCE (2001)
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
NC Lau et al.
SCIENCE (2001)