Related references
Note: Only part of the references are listed.Does acetogenesis really require especially low reduction potential?
Arren Bar-Even
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2013)
Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes
Arren Bar-Even et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2013)
A note on the kinetics of enzyme action: A decomposition that highlights thermodynamic effects
Elad Noor et al.
FEBS LETTERS (2013)
A Bacterial Glucanotransferase Can Replace the Complex Maltose Metabolism Required for Starch to Sucrose Conversion in Leaves at Night
Christian Ruzanski et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast
Guillermo G. Zampar et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
Synthetic non-oxidative glycolysis enables complete carbon conservation
Igor W. Bogorad et al.
NATURE (2013)
Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo
Hannes Link et al.
NATURE BIOTECHNOLOGY (2013)
Glycolytic strategy as a tradeoff between energy yield and protein cost
Avi Flamholz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Consistent Estimation of Gibbs Energy Using Component Contributions
Elad Noor et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Thermodynamic constraints shape the structure of carbon fixation pathways
Arren Bar-Even et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2012)
An integrated open framework for thermodynamics of reactions that combines accuracy and coverage
Elad Noor et al.
BIOINFORMATICS (2012)
A survey of carbon fixation pathways through a quantitative lens
Arren Bar-Even et al.
JOURNAL OF EXPERIMENTAL BOTANY (2012)
Rethinking glycolysis: on the biochemical logic of metabolic pathways
Arren Bar-Even et al.
NATURE CHEMICAL BIOLOGY (2012)
Efficiency in Evolutionary Trade-Offs
Elad Noor et al.
SCIENCE (2012)
Multidimensional Optimality of Microbial Metabolism
Robert Schuetz et al.
SCIENCE (2012)
Impact of Stoichiometry Representation on Simulation of Genotype-Phenotype Relationships in Metabolic Networks
Ana Rita Brochado et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters
Arren Bar-Even et al.
BIOCHEMISTRY (2011)
Enhancement of the Rate of Pyrophosphate Hydrolysis by Nonenzymatic Catalysts and by Inorganic Pyrophosphatase
Randy B. Stockbridge et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
Carbohydrate-active enzymes exemplify entropic principles in metabolism
Oender Kartal et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Synergy between C-13-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli
Xuewen Chen et al.
METABOLIC ENGINEERING (2011)
Open Babel: An open chemical toolbox
Noel M. O'Boyle et al.
JOURNAL OF CHEMINFORMATICS (2011)
Hydrophobicity and Charge Shape Cellular Metabolite Concentrations
Arren Bar-Even et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Central Carbon Metabolism as a Minimal Biochemical Walk between Precursors for Biomass and Energy
Elad Noor et al.
MOLECULAR CELL (2010)
Design and analysis of synthetic carbon fixation pathways
Arren Bar-Even et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Production of biofuels and biochemicals: in need of an ORACLE
Ljubisa Miskovic et al.
TRENDS IN BIOTECHNOLOGY (2010)
Not just a circle: flux modes in the plant TCA cycle
Lee J. Sweetlove et al.
TRENDS IN PLANT SCIENCE (2010)
Thermodynamic Analysis of Biodegradation Pathways
Stacey D. Finley et al.
BIOTECHNOLOGY AND BIOENGINEERING (2009)
Influence of Uncertainties in pH, pMg, Activity Coefficients, Metabolite Concentrations, and Other Factors on the Analysis of the Thermodynamic Feasibility of Metabolic Pathways
Vojislav Vojinovic et al.
BIOTECHNOLOGY AND BIOENGINEERING (2009)
Shifts in growth strategies reflect tradeoffs in cellular economics
Douwe Molenaar et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
Bryson D. Bennett et al.
NATURE CHEMICAL BIOLOGY (2009)
An ATP and Oxalate Generating Variant Tricarboxylic Acid Cycle Counters Aluminum Toxicity in Pseudomonas fluorescens
Ranji Singh et al.
PLOS ONE (2009)
Is maximization of molar yield in metabolic networks favoured by evolution?
Stefan Schuster et al.
JOURNAL OF THEORETICAL BIOLOGY (2008)
KEGG for linking genomes to life and the environment
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2008)
The yfiD protein contributes to the pyruvate formate-lyase flux in an Escherichia coli arcA mutant strain
Jiangfeng Zhu et al.
BIOTECHNOLOGY AND BIOENGINEERING (2007)
Multiple high-throughput analyses monitor the response of E-coli to perturbations
Nobuyoshi Ishii et al.
SCIENCE (2007)
Relationship between Thermodynamic Driving Force and One-Way Fluxes in Reversible Processes
Daniel A. Beard et al.
PLOS ONE (2007)
Thermodynamics of microbial growth and metabolism:: An analysis of the current situation
U von Stockar et al.
JOURNAL OF BIOTECHNOLOGY (2006)
Unusual pathways and enzymes of central carbohydrate metabolism in Archaea
B Siebers et al.
CURRENT OPINION IN MICROBIOLOGY (2005)
The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic archaea: a re-evaluation
H Ahmed et al.
BIOCHEMICAL JOURNAL (2005)
Malate:quinone oxidoreductase (MqoB) is required for growth on acetate and linear terpenes in Pseudomonas citronellolis
K Förster-Fromme et al.
FEMS MICROBIOLOGY LETTERS (2005)
Exploring the diversity of complex metabolic networks
V Hatzimanikatis et al.
BIOINFORMATICS (2005)
Thermodynamic-based computational profiling of cellular regulatory control in hepatocyte metabolism
DA Beard et al.
AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2005)
Metabolic control analysis under uncertainty: Framework development and case studies
LQ Wang et al.
BIOPHYSICAL JOURNAL (2004)
Thermodynamics of enzyme-catalyzed reactions - a database for quantitative biochemistry
RN Goldberg et al.
BIOINFORMATICS (2004)
Kinetics of organic transformations under mild aqueous conditions: Implications for the origin of life and its metabolism
AL Weber
ORIGINS OF LIFE AND EVOLUTION OF THE BIOSPHERE (2004)
Optimal re-design of primary metabolism in Escherichia coli using linlog kinetics
D Visser et al.
METABOLIC ENGINEERING (2004)
The energetic conversion competence of Escherichia coli during aerobic respiration studied by 31P NMR using a circulating fermentation system
Y Noguchi et al.
JOURNAL OF BIOCHEMISTRY (2004)
Metabolic engineering of a phosphoketolase pathway for pentose catabolism in Saccharomyces cerevisiae
M Sonderegger et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli
E Fischer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
The unique features of glycolytic pathways in Archaea
CH Verhees et al.
BIOCHEMICAL JOURNAL (2003)
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
A Dufresne et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Review of the BRENDA database
P Pharkya et al.
METABOLIC ENGINEERING (2003)
Functional Specificities of methylglyoxal synthase and triosephosphate isomerase: A combined QM/MM analysis
XD Zhang et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2002)
Analysis of optimality in natural and perturbed metabolic networks
D Segrè et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
The glycolytic flux in Escherichia coli is controlled by the demand for ATP
BJ Koebmann et al.
JOURNAL OF BACTERIOLOGY (2002)
Non-growing Escherichia coli cells starved for glucose or phosphate use different mechanisms to survive oxidative stress
PL Moreau et al.
MOLECULAR MICROBIOLOGY (2001)
Evolutionary optimization of metabolic pathways. Theoretical reconstruction of the stoichiometry of ATP and NADH producing systems
O Ebenhoh et al.
BULLETIN OF MATHEMATICAL BIOLOGY (2001)
Functions of the membrane-associated and cytoplasmic malate dehydrogenases in the citric acid cycle of Escherichia coli
ME van der Rest et al.
JOURNAL OF BACTERIOLOGY (2000)
Functions of the membrane-associated and cytoplasmic malate dehydrogenases in the citric acid cycle of Corynebacterium glutamicum
D Molenaar et al.
JOURNAL OF BACTERIOLOGY (2000)
Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli
S Alexeeva et al.
JOURNAL OF BACTERIOLOGY (2000)
Another unusual type of citric acid cycle enzyme in Helicobacter pylori:: the malate:quinone oxidoreductase
B Kather et al.
JOURNAL OF BACTERIOLOGY (2000)
Share Paper
