Related references
Note: Only part of the references are listed.Lack of tailless leads to an increase in expression variability in Drosophila embryos
Hilde Janssens et al.
DEVELOPMENTAL BIOLOGY (2013)
Quantitative dynamics and increased variability of segmentation gene expression in the Drosophila Kruppel and knirps mutants
Svetlana Surkova et al.
DEVELOPMENTAL BIOLOGY (2013)
Accurate measurements of dynamics and reproducibility in small genetic networks
Julien O. Dubuis et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
A cooperative strategy for parameter estimation in large scale systems biology models
Alejandro F. Villaverde et al.
BMC SYSTEMS BIOLOGY (2012)
A Whole-Cell Computational Model Predicts Phenotype from Genotype
Jonathan R. Karr et al.
CELL (2012)
The Inheritance of Process: A Dynamical Systems Approach
Johannes Jaeger et al.
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2012)
Translational control in cellular and developmental processes
Jian Kong et al.
NATURE REVIEWS GENETICS (2012)
Medium-Throughput Processing of Whole Mount In Situ Hybridisation Experiments into Gene Expression Domains
Anton Crombach et al.
PLOS ONE (2012)
Modeling of Gap Gene Expression in Drosophila Kruppel Mutants
Konstantin Kozlov et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Efficient Reverse-Engineering of a Developmental Gene Regulatory Network
Anton Crombach et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
AMIGO, a toolbox for advanced model identification in systems biology using global optimization
Eva Balsa-Canto et al.
BIOINFORMATICS (2011)
Measurement and Perturbation of Morphogen Lifetime: Effects on Gradient Shape
Jeffrey A. Drocco et al.
BIOPHYSICAL JOURNAL (2011)
The gap gene network
Johannes Jaeger
CELLULAR AND MOLECULAR LIFE SCIENCES (2011)
Model-based inference of biochemical parameters and dynamic properties of microbial signal transduction networks
Joerg Schaber et al.
CURRENT OPINION IN BIOTECHNOLOGY (2011)
Morphogen gradient formation and action Insights from studying Bicoid protein degradation
Junbo Liu et al.
FLY (2011)
Addressing parameter identifiability by model-based experimentation
A. Raue et al.
IET SYSTEMS BIOLOGY (2011)
Quantification of mRNA and protein and integration with protein turnover in a bacterium
Tobias Maier et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Global quantification of mammalian gene expression control
Bjoern Schwanhaeusser et al.
NATURE (2011)
Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods
Oana-Teodora Chis et al.
PLOS ONE (2011)
The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized mRNA
Shawn C. Little et al.
PLOS BIOLOGY (2011)
Towards a genome-scale kinetic model of cellular metabolism
Kieran Smallbone et al.
BMC SYSTEMS BIOLOGY (2010)
An iterative identification procedure for dynamic modeling of biochemical networks
Eva Balsa-Canto et al.
BMC SYSTEMS BIOLOGY (2010)
An evolutionary method for complex-process optimization
Jose A. Egea et al.
COMPUTERS & OPERATIONS RESEARCH (2010)
Shadow Enhancers Foster Robustness of Drosophila Gastrulation
Michael W. Perry et al.
CURRENT BIOLOGY (2010)
Cellular signaling identifiability analysis: A case study
Ryan T. Roper et al.
JOURNAL OF THEORETICAL BIOLOGY (2010)
Bacterial adaptation through distributed sensing of metabolic fluxes
Oliver Kotte et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Genome-wide analysis of mRNA decay patterns during early Drosophila development
Stefan Thomsen et al.
GENOME BIOLOGY (2010)
Gene regulatory network inference: Data integration in dynamic models-A review
Michael Hecker et al.
BIOSYSTEMS (2009)
A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches
Irene Cantone et al.
CELL (2009)
Systems biology: experimental design
Clemens Kreutz et al.
FEBS JOURNAL (2009)
Systems biology: parameter estimation for biochemical models
Maksat Ashyraliyev et al.
FEBS JOURNAL (2009)
Correlation of mRNA and protein in complex biological samples
Tobias Maier et al.
FEBS LETTERS (2009)
GCPReg package for registration of the segmentation gene expression data in Drosophila
Konstantin N. Kozlov et al.
FLY (2009)
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution
Andrei Pisarev et al.
NUCLEIC ACIDS RESEARCH (2009)
Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation
Manu et al.
PLOS BIOLOGY (2009)
Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
Manu et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Gene Circuit Analysis of the Terminal Gap Gene huckebein
Maksat Ashyraliyev et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Optimal Experimental Design for Parameter Estimation of a Cell Signaling Model
Samuel Bandara et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Improved scatter search for the global optimization of computationally expensive dynamic models
Jose A. Egea et al.
JOURNAL OF GLOBAL OPTIMIZATION (2009)
Parameter estimation and determinability analysis applied to Drosophila gap gene circuits
Maksat Ashyraliyev et al.
BMC SYSTEMS BIOLOGY (2008)
Optimization in computational systems biology
Julio R. Banga
BMC SYSTEMS BIOLOGY (2008)
Characterization of the Drosophila segment determination morphome
Svetlana Surkova et al.
DEVELOPMENTAL BIOLOGY (2008)
Parameter estimation and optimal experimental design
Julio R. Banga et al.
ESSAYS IN BIOCHEMISTRY: SYSTEMS BIOLOGY, VOL 45 (2008)
Pipeline for acquisition of quantitative data on segmentation gene expression from confocal images
Svetlana Surkova et al.
FLY (2008)
Computational procedures for optimal experimental design in biological systems
E. Balsa-Canto et al.
IET SYSTEMS BIOLOGY (2008)
Properties of developmental gene regulatory networks
Eric H. Davidson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Identifiability of chemical reaction networks
Gheorghe Craciun et al.
JOURNAL OF MATHEMATICAL CHEMISTRY (2008)
A predictive model for transcriptional control of physiology in a free living cell
Richard Bonneau et al.
CELL (2007)
Global optimization for integrated design and control of computationally expensive process models
Jose A. Egea et al.
INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH (2007)
Probing the limits to positional information
Thomas Gregor et al.
CELL (2007)
Scatter search for chemical and bio-process optimization
Jose A. Egea et al.
JOURNAL OF GLOBAL OPTIMIZATION (2007)
How to infer gene networks from expression profiles
Mukesh Bansal et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Known maternal gradients are not sufficient for the establishment of gap domains in Drosophila melanogaster
Johannes Jaeger et al.
MECHANISMS OF DEVELOPMENT (2007)
Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments
Natal A. W. van Riel
BRIEFINGS IN BIOINFORMATICS (2006)
Linking data to models: data regression
Khuloud Jaqaman et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene
Hilde Janssens et al.
NATURE GENETICS (2006)
Reverse engineering the gap gene network of Drosophila melanogaster
Theodore J. Perkins et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
A hybrid approach for efficient and robust parameter estimation in biochemical pathways
M Rodriguez-Fernandez et al.
BIOSYSTEMS (2006)
Gene expression time delays and turing pattern formation systems
EA Gaffney et al.
BULLETIN OF MATHEMATICAL BIOLOGY (2006)
Integrative model of the response of yeast to osmotic shock
E Klipp et al.
NATURE BIOTECHNOLOGY (2005)
Nonlinear protein degradation and the function of genetic circuits
NE Buchler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
A high-throughput method for quantifying gene expression data from early Drosophila embryos
H Janssens et al.
DEVELOPMENT GENES AND EVOLUTION (2005)
Iterative approach to model identification of biological networks
KG Gadkar et al.
BMC BIOINFORMATICS (2005)
Removal of background signal from in situ data on the expression of segmentation genes in Drosophila
E Myasnikova et al.
DEVELOPMENT GENES AND EVOLUTION (2005)
The dynamic systems approach to control and regulation of intracellular networks
O Wolkenhauer et al.
FEBS LETTERS (2005)
The molecular elements that underlie developmental evolution
CR Alonso et al.
NATURE REVIEWS GENETICS (2005)
A nonlinear discrete dynamical model for transcriptional regulation: Construction and properties
J Goutsias et al.
BIOPHYSICAL JOURNAL (2004)
A database for management of gene expression data in situ
E Poustelnikova et al.
BIOINFORMATICS (2004)
Multiplex detection of RNA expression in Drosophila embryos
D Kosman et al.
SCIENCE (2004)
Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster
J Jaeger et al.
GENETICS (2004)
Dynamic control of positional information in the early Drosophila embryo
J Jaeger et al.
NATURE (2004)
Mathematical models in microbial systems biology
J Stelling
CURRENT OPINION IN MICROBIOLOGY (2004)
Inferring genetic networks and identifying compound mode of action via expression profiling
TS Gardner et al.
SCIENCE (2003)
Reverse engineering gene networks:: Integrating genetic perturbations with dynamical modeling
J Tegnér et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Reverse engineering gene networks using singular value decomposition and robust regression
MKS Yeung et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Modeling and simulation of genetic regulatory systems: A literature review
H De Jong
JOURNAL OF COMPUTATIONAL BIOLOGY (2002)
Jackknife and bootstrap methods in the identification of dynamic models
C Duchesne et al.
JOURNAL OF PROCESS CONTROL (2001)
Registration of the expression patterns of Drosophila segmentation genes by two independent methods
E Myasnikova et al.
BIOINFORMATICS (2001)
The bootstrap: a tutorial
R Wehrens et al.
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS (2000)