4.6 Article

Structure and Age Jointly Influence Rates of Protein Evolution

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Role of Low-Complexity Sequences in the Formation of Novel Protein Coding Sequences

Macarena Toll-Riera et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Ensembl 2011

Paul Flicek et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Evolutionary Biology

Relaxed Purifying Selection and Possibly High Rate of Adaptation in Primate Lineage-Specific Genes

James J. Cai et al.

GENOME BIOLOGY AND EVOLUTION (2010)

Article Biochemistry & Molecular Biology

Young proteins experience more variable selection pressures than old proteins

Anchal Vishnoi et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Structural Calibration of the Rates of Amino Acid Evolution in a Search for Darwin in Drifting Biological Systems

Christina Toft et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Multidisciplinary Sciences

Universal distribution of protein evolution rates as a consequence of protein folding physics

Alexander E. Lobkovsky et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Origin of Primate Orphan Genes: A Comparative Genomics Approach

Macarena Toll-Riera et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

Solvent Exposure Imparts Similar Selective Pressures across a Range of Yeast Proteins

Gavin C. Conant et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

Structural Determinants of Protein Evolution Are Context-Sensitive at the Residue Level

Eric A. Franzosa et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Multidisciplinary Sciences

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

Yuri I. Wolf et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biotechnology & Applied Microbiology

Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins

Michelle Simon et al.

GENOME BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution

D. Allan Drummond et al.

Article Biology

Protein robustness promotes evolutionary innovations on large evolutionary time-scales

Evandro Ferrada et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)

Article Biochemical Research Methods

Four-body scoring function for mutagenesis

Chris Deutsch et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys

Yaping Feng et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Assessing the determinants of evolutionary rates in the presence of noise

Joshua B. Plotkin et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Multidisciplinary Sciences

Evolution of protein structural classes and protein sequence families

In-Geol Choi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Computational mutagenesis studies of protein structure-function correlations

Majid Masso et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemical Research Methods

Fold designability, distribution, and disease

Philip Wong et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Review Genetics & Heredity

An integrated view of protein evolution

C Pál et al.

NATURE REVIEWS GENETICS (2006)

Article Multidisciplinary Sciences

Protein stability promotes evolvability

JD Bloom et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

A single determinant dominates the rate of yeast protein evolution

DA Drummond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Biochemistry & Molecular Biology

Structural determinants of the rate of protein evolution in yeast

Jesse D. Bloom et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Multidisciplinary Sciences

Why highly expressed proteins evolve slowly

DA Drummond et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Functional genomic analysis of the rates of protein evolution

DP Wall et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Letter Biochemistry & Molecular Biology

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

MW Hahn et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Inverse relationship between evolutionary rate and age of mammalian genes

MM Albà et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Multidisciplinary Sciences

Thermodynamic prediction of protein neutrality

JD Bloom et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Bacterial Genomes as new gene homes:: The genealogy of ORFans in E-coli

V Daubin et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

An evolutionary analysis of orphan genes in Drosophila

T Domazet-Loso et al.

GENOME RESEARCH (2003)

Article Biochemical Research Methods

PISCES: a protein sequence culling server

GL Wang et al.

BIOINFORMATICS (2003)

Article Physics, Multidisciplinary

Structural determinant of protein designability

JL England et al.

PHYSICAL REVIEW LETTERS (2003)

Article Evolutionary Biology

The relationship of protein conservation and sequence length

David J. Lipman et al.

BMC EVOLUTIONARY BIOLOGY (2002)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Multidisciplinary Sciences

Evolutionary rate in the protein interaction network

HB Fraser et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Four-body potentials reveal protein-specific correlations to stability changes caused by hydrophobic core mutations

CW Carter et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Multidisciplinary Sciences

Protein dispensability and rate of evolution

AE Hirsh et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans

G Marais et al.

JOURNAL OF MOLECULAR EVOLUTION (2001)

Article Biochemistry & Molecular Biology

T-Coffee: A novel method for fast and accurate multiple sequence alignment

C Notredame et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)

Article Biochemistry & Molecular Biology

Decoys 'R' Us: A database of incorrect conformations to improve protein structure prediction

R Samudrala et al.

PROTEIN SCIENCE (2000)

Article Biochemistry & Molecular Biology

Solvent accessibility and purifying selection within proteins of Escherichia coli and Salmonella enterica

CD Bustamante et al.

MOLECULAR BIOLOGY AND EVOLUTION (2000)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)