4.6 Article

Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Nucleotide Deficiency Promotes Genomic Instability in Early Stages of Cancer Development

Assaf C. Bester et al.

Review Physics, Multidisciplinary

Multi-scale coding of genomic information: From DNA sequence to genome structure and function

Alain Arneodo et al.

PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS (2011)

Review Biochemistry & Molecular Biology

Eukaryotic Chromosome DNA Replication: Where, When and How?

Hisao Masai et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)

Article Biochemistry & Molecular Biology

Reconciling stochastic origin firing with defined replication timing

Nicholas Rhind et al.

CHROMOSOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Genome-wide analysis of the replication program in mammals

Shlomit Farkash-Amar et al.

CHROMOSOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Mathematical modelling of eukaryotic DNA replication

Olivier Hyrien et al.

CHROMOSOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Domain-wide regulation of DNA replication timing during mammalian development

Benjamin D. Pope et al.

CHROMOSOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

Ichiro Hiratani et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

Chun-Long Chen et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

ATR/Chk1 pathway is essential for resumption of DNA synthesis and cell survival in UV-irradiated XP variant cells

Emmanuelle Despras et al.

HUMAN MOLECULAR GENETICS (2010)

Review Genetics & Heredity

Evaluating genome-scale approaches to eukaryotic DNA replication

David M. Gilbert

NATURE REVIEWS GENETICS (2010)

Article Biochemistry & Molecular Biology

Mathematical modelling of whole chromosome replication

Alessandro P. S. de Moura et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

R. Scott Hansen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Genetics & Heredity

S Phase Progression in Human Cells Is Dictated by the Genetic Continuity of DNA Foci

Apolinar Maya-Mendoza et al.

PLOS GENETICS (2010)

Article Biochemistry & Molecular Biology

Predictable dynamic program of timing of DNA replication in human cells

Romain Desprat et al.

GENOME RESEARCH (2009)

Article Cell Biology

Decreased replication origin activity in temporal transition regions

Zeqiang Guan et al.

JOURNAL OF CELL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells

Benjamin Audit et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Universal Temporal Profile of Replication Origin Activation in Eukaryotes

Arach Goldar et al.

PLOS ONE (2009)

Article Biochemistry & Molecular Biology

Global organization of replication time zones of the mouse genome

Shlomit Farkash-Amar et al.

GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

A revisionist replicon model for higher eukaryotic genomes

J. L. Hamlin et al.

JOURNAL OF CELLULAR BIOCHEMISTRY (2008)

Article Biochemistry & Molecular Biology

DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI

Daniel M. Czajkowsky et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

ATP-dependent chromatin remodeling shapes the DNA replication landscape

Jack A. Vincent et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

A Dynamic Stochastic Model for DNA Replication Initiation in Early Embryos

Arach Goldar et al.

PLOS ONE (2008)

Article Multidisciplinary Sciences

Genome-wide studies highlight indirect links between human replication origins and gene regulation

Jean-Charles Cadoret et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation

Ichiro Hiratani et al.

PLOS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas

Neerja Karnani et al.

GENOME RESEARCH (2007)

Article Cell Biology

DNA replication origin interference increases the spacing between initiation events in human cells

Ronald Lebofsky et al.

MOLECULAR BIOLOGY OF THE CELL (2006)

Article Biochemistry & Molecular Biology

Genome-wide characterization of fission yeast DNA replication origins

Christian Heichinger et al.

EMBO JOURNAL (2006)

Article Cell Biology

DNA replication origins fire stochastically in fission yeast

PK Patel et al.

MOLECULAR BIOLOGY OF THE CELL (2006)

Article Biochemistry & Molecular Biology

Replication timing of the human genome

K Woodfine et al.

HUMAN MOLECULAR GENETICS (2004)

Article Cell Biology

Coordination of replication and transcription along a Drosophila chromosome

DM MacAlpine et al.

GENES & DEVELOPMENT (2004)

Review Biochemistry & Molecular Biology

Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem

O Hyrien et al.

BIOESSAYS (2003)

Article Biochemistry & Molecular Biology

The UCSC Genome Browser Database

D Karolchik et al.

NUCLEIC ACIDS RESEARCH (2003)

Review Cell Biology

Replicating by the clock

A Goren et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2003)

Article Multidisciplinary Sciences

Replication dynamics of the yeast genome

MK Raghuraman et al.

SCIENCE (2001)

Article Biochemistry & Molecular Biology

Monitoring S phase progression globally and locally using BrdU incorporation in TK+ yeast strains

A Lengronne et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemistry & Molecular Biology

Replication fork density increases during DNA synthesis in X-laevis egg extracts

J Herrick et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)

Article Biochemistry & Molecular Biology

Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

R Berezney et al.

CHROMOSOMA (2000)

Article Biochemistry & Molecular Biology

Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos

I Lucas et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)