4.6 Article

Accurate Quantification of Functional Analogy among Close Homologs

Related references

Note: Only part of the references are listed.
Article Mathematical & Computational Biology

Genome-wide functional annotation by integrating multiple microarray datasets using meta-analysis

Gyan Prakash Srivastava et al.

INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

The Pfam protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

Global alignment of protein-protein interaction networks by graph matching methods

Mikhail Zaslavskiy et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Exploring the human genome with functional maps

Curtis Huttenhower et al.

GENOME RESEARCH (2009)

Review Biochemistry & Molecular Biology

Yeast Two-Hybrid, a Powerful Tool for Systems Biology

Anna Brueckner et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2009)

Article Biochemistry & Molecular Biology

InterPro: the integrative protein signature database

Sarah Hunter et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

A Comparative Study of Drosophila and Human A-Type Lamins

Sandra R. Schulze et al.

PLOS ONE (2009)

Article Biochemical Research Methods

Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans

Maria D. Chikina et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis

Matthew A. Hibbs et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

The Sleipnir library for computational functional genomics

Curtis Huttenhower et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

A mitochondrial protein compendium elucidates complex I disease biology

David J. Pagliarini et al.

Article Multidisciplinary Sciences

Intestinal signaling to GABAergic neurons regulates a rhythmic behavior in Caenorhabditis elegans

Timothy R. Mahoney et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Global alignment of multiple protein interaction networks with application to functional orthology detection

Rohit Singh et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biotechnology & Applied Microbiology

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

Lourdes Pena-Castillo et al.

GENOME BIOLOGY (2008)

Article Biochemical Research Methods

Alignment of molecular networks by integer quadratic programming

Li Zhenping et al.

BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

Characterization of lamin Mutation Phenotypes in Drosophila and Comparison to Human Laminopathies

Andres Munoz-Alarcon et al.

PLOS ONE (2007)

Article Biochemical Research Methods

A scalable method for integration and functional analysis of multiple microarray datasets

Curtis Huttenhower et al.

BIOINFORMATICS (2006)

Article Biotechnology & Applied Microbiology

Finding function: evaluation methods for functional genomic data

Chad L. Myers et al.

BMC GENOMICS (2006)

Article Multidisciplinary Sciences

Cross-species analysis of biological networks by Bayesian alignment

Johannes Berg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemical Research Methods

The complete yeast mitochondrial proteome: Multidimensional separation techniques for mitochondrial proteomics

Joerg Reinders et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Article Biochemistry & Molecular Biology

Systematic identification of functional orthologs based on protein network comparison

S Bandyopadhyay et al.

GENOME RESEARCH (2006)

Article Biochemistry & Molecular Biology

TreeFam: a curated database of phylogenetic trees of animal gene families

Heng Li et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans

B Sönnichsen et al.

NATURE (2005)

Article Biotechnology & Applied Microbiology

Discovery of biological networks from diverse functional genomic data

Chad L. Myers et al.

GENOME BIOLOGY (2005)

Article Multidisciplinary Sciences

A gene atlas of the mouse and human protein-encoding transcriptomes

AI Su et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Cell Biology

SNAP-23 functions in docking/fusion of granules at low Ca2+

E Chieregatti et al.

MOLECULAR BIOLOGY OF THE CELL (2004)

Article Biotechnology & Applied Microbiology

Bioconductor: open software development for computational biology and bioinformatics

RC Gentleman et al.

GENOME BIOLOGY (2004)

Article Multidisciplinary Sciences

The proteome of Saccharomyces cerevisiae mitochondria

A Sickmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Neuron cell type-specific SNAP-25 expression driven by multiple regulatory elements in the nematode Caenorhabditis elegans

SB Hwang et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Developmental Biology

Global analysis of dauer gene expression in Caenorhabditis elegans

J Wang et al.

DEVELOPMENT (2003)

Article Multidisciplinary Sciences

Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms

O Alter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biotechnology & Applied Microbiology

The GRID: The General Repository for Interaction Datasets

BJ Breitkreutz et al.

GENOME BIOLOGY (2003)

Article Multidisciplinary Sciences

Transitive functional annotation by shortest-path analysis of gene expression data

XH Zhou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Review Multidisciplinary Sciences

Insulin signalling and the regulation of glucose and lipid metabolism

AR Saltiel et al.

NATURE (2001)

Article Multidisciplinary Sciences

The microenvironment of the tumour-host interface

LA Liotta et al.

NATURE (2001)