Related references
Note: Only part of the references are listed.Introducing simulated cellular architecture to the quantitative analysis of fluorescent microscopy
Mark A. DePristo et al.
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2009)
Accurate particle-based simulation of adsorption, desorption and partial transmission
Steven S. Andrews
PHYSICAL BIOLOGY (2009)
Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions
Radek Erban et al.
PHYSICAL BIOLOGY (2009)
GridCell: a stochastic particle-based biological system simulator
Laurier Boulianne et al.
BMC SYSTEMS BIOLOGY (2008)
Model for Protein Concentration Gradients in the Cytoplasm
Karen Lipkow et al.
CELLULAR AND MOLECULAR BIOENGINEERING (2008)
NVIDIA Tesla: A unified graphics and computing architecture
Erik Lindholm et al.
IEEE MICRO (2008)
FAST MONTE CARLO SIMULATION METHODS FOR BIOLOGICAL REACTION-DIFFUSION SYSTEMS IN SOLUTION AND ON SURFACES
Rex A. Kerr et al.
SIAM JOURNAL ON SCIENTIFIC COMPUTING (2008)
Computational methods for diffusion-influenced biochemical reactions
Maciej Dobrzynski et al.
BIOINFORMATICS (2007)
Reactive boundary conditions for stochastic simulations of reaction-diffusion processes
Radek Erban et al.
PHYSICAL BIOLOGY (2007)
Cell++ - Simulating biochemical pathways
Chris Sanford et al.
BIOINFORMATICS (2006)
A systematic investigation of the rate laws valid in intracellular environments
R. Grima et al.
BIOPHYSICAL CHEMISTRY (2006)
Deviant effects in molecular reaction pathways
Michael S. Samoilov et al.
NATURE BIOTECHNOLOGY (2006)
Three-dimensional reconstruction of the membrane skeleton at the plasma membrane interface by electron tomography
Nobuhiro Morone et al.
JOURNAL OF CELL BIOLOGY (2006)
Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli
J. Vidal Rodriguez et al.
BIOINFORMATICS (2006)
Rapid turnover of stereocilia membrane proteins:: Evidence from the trafficking and mobility of plasma membrane Ca2+-ATPase
M'hamed Grati et al.
JOURNAL OF NEUROSCIENCE (2006)
Tools for kinetic modeling of biochemical networks
Rui Alves et al.
NATURE BIOTECHNOLOGY (2006)
Changing cellular location of CheZ predicted by molecular simulations
Karen Lipkow
PLOS COMPUTATIONAL BIOLOGY (2006)
Particle simulation approach for subcellular dynamics and interactions of biological molecules
Ryuzo Azuma et al.
BMC BIOINFORMATICS (2006)
Incorporating diffusion in complex geometries into stochastic chemical kinetics simulations
SA Isaacson et al.
SIAM JOURNAL ON SCIENTIFIC COMPUTING (2006)
Green's-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space
JS van Zon et al.
JOURNAL OF CHEMICAL PHYSICS (2005)
'On-the-fly' or 'generate-first' modeling?
ML Blinov et al.
NATURE BIOTECHNOLOGY (2005)
Regulated cell-to-cell variation in a cell-fate decision system
A Colman-Lerner et al.
NATURE (2005)
Evidence for ectopic neurotransmission at a neuronal synapse
JS Coggan et al.
SCIENCE (2005)
Stochastic reaction-diffusion simulation with MesoRD
J Hattne et al.
BIOINFORMATICS (2005)
Serial rebinding of ligands to clustered receptors as exemplified by bacterial chemotaxis
SS Andrews
PHYSICAL BIOLOGY (2005)
Space as the final frontier in stochastic simulations of biological systems
C Lemerle et al.
FEBS LETTERS (2005)
Phosphatase localization in bacterial chemotaxis: divergent mechanisms, convergent principles
CV Rao et al.
PHYSICAL BIOLOGY (2005)
Automatic generation of cellular reaction networks with Moleculizer 1.0
L Lok et al.
NATURE BIOTECHNOLOGY (2005)
Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli
K Lipkow et al.
JOURNAL OF BACTERIOLOGY (2005)
Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
SS Andrews et al.
PHYSICAL BIOLOGY (2004)
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
S Sundararaj et al.
NUCLEIC ACIDS RESEARCH (2004)
Cellular stoichiometry of the components of the chemotaxis signaling complex
MS Li et al.
JOURNAL OF BACTERIOLOGY (2004)
A multi-scaled approach for simulating chemical reaction systems
K Burrage et al.
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2004)
A quantitative characterization of the yeast heterotrimeric G protein cycle
TM Yi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Conformational spread in a ring of proteins:: A stochastic approach to allostery
TAJ Duke et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Efficient exact stochastic simulation of chemical systems with many species and many channels
MA Gibson et al.
JOURNAL OF PHYSICAL CHEMISTRY A (2000)
Share Paper
