Related references
Note: Only part of the references are listed.Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models
Par Bjelkmar et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)
Synaptotagmin-Mediated Bending of the Target Membrane Is a Critical Step in Ca2+-Regulated Fusion
Enfu Hui et al.
CELL (2009)
Single Vesicle Millisecond Fusion Kinetics Reveals Number of SNARE Complexes Optimal for Fast SNARE-mediated Membrane Fusion
Marta K. Domanska et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Functional Analysis of the Transmembrane Domain in Paramyxovirus F Protein-Mediated Membrane Fusion
Mei Lin Z. Bissonnette et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel
Ricarda J. C. Hilf et al.
NATURE (2009)
Productive hemifusion intermediates in fast vesicle fusion driven by neuronal SNAREs
Tingting Liu et al.
BIOPHYSICAL JOURNAL (2008)
P-LINCS: A parallel linear constraint solver for molecular simulation
Berk Hess
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
Berk Hess et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Mechanics of membrane fusion
Leonid V. Chernomordik et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Single-particle kinetics of influenza virus membrane fusion
Daniel L. Floyd et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Control of membrane fusion mechanism by lipid composition: Predictions from ensemble molecular dynamics
Peter M. Kasson et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Rapid membrane fusion of individual virus particles with supported lipid bilayers
Laura Wessels et al.
BIOPHYSICAL JOURNAL (2007)
Molecular dynamics simulations of lipid vesicle fusion in atomic detail
Volker Knecht et al.
BIOPHYSICAL JOURNAL (2007)
How synaptotagmin promotes membrane fusion
Sascha Martens et al.
SCIENCE (2007)
Point-like protrusion as a prestalk intermediate in membrane fusion pathway
Avishay Efrat et al.
BIOPHYSICAL JOURNAL (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Sampling the multiple folding mechanisms of Trp-cage in explicit solvent
J. Juraszek et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Conical electron tomography of a chemical synapse: Vesicles docked to the active zone are hemi-fused
G. A. Zampighi et al.
BIOPHYSICAL JOURNAL (2006)
Ensemble molecular dynamics yields submillisecond kinetics and intermediates of membrane fusion
Peter M. Kasson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Fusion peptide of influenza hemagglutinin requires a fixed angle boomerang structure for activity
AL Lai et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Molecular dynamics simulations of the influenza hemagglutinin fusion peptide in micelles and bilayers:: Conformational analysis of peptide and lipids
P Lagüe et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
SNARE-driven, 25-millisecond vesicle fusion in vitro
TT Liu et al.
BIOPHYSICAL JOURNAL (2005)
Tension-induced fusion of bilayer membranes and vesicles
JC Shillcock et al.
NATURE MATERIALS (2005)
Plasticity of influenza haemagglutinin fusion peptides and their interaction with lipid bilayers
L Vaccaro et al.
BIOPHYSICAL JOURNAL (2005)
The energetics of membrane fusion from binding, through hemifusion, pore formation, and pore enlargement
FS Cohen et al.
JOURNAL OF MEMBRANE BIOLOGY (2004)
Bilayer conformation of fusion peptide of influenza virus hemagglutinin: A molecular dynamics simulation study
Q Huang et al.
BIOPHYSICAL JOURNAL (2004)
Energetics of vesicle fusion intermediates: Comparison of calculations with observed effects of osmotic and curvature stresses
VS Malinin et al.
BIOPHYSICAL JOURNAL (2004)
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
Y Duan et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2003)
Insights into the molecular mechanism of membrane fusion from simulation: Evidence for the association of splayed tails
MJ Stevens et al.
PHYSICAL REVIEW LETTERS (2003)
The mechanism of vesicle fusion as revealed by molecular dynamics simulations
SJ Marrink et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)
A new mechanism of model membrane fusion determined from Monte Carlo simulation
M Müller et al.
BIOPHYSICAL JOURNAL (2003)
Membrane fusion: a structural perspective on the interplay of lipids and proteins
LK Tamm et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2003)
Observation of a membrane fusion intermediate structure
L Yang et al.
SCIENCE (2002)
Membrane structure and fusion-triggering conformational change of the fusion domain from influenza hemagglutinin
X Han et al.
NATURE STRUCTURAL BIOLOGY (2001)
Fast lipid disorientation at the onset of membrane fusion revealed by molecular dynamics simulations
S Ohta-Iino et al.
BIOPHYSICAL JOURNAL (2001)
Influence of lipid composition on physical properties and PEG-mediated fusion of curved and uncurved model membrane vesicles: Nature's own fusogenic lipid bilayer
ME Haque et al.
BIOCHEMISTRY (2001)
Reaction coordinates of biomolecular isomerization
PG Bolhuis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)