Related references
Note: Only part of the references are listed.Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences
Itay Tirosh et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness
Margarita V. Meer et al.
NATURE (2010)
The UCSC Genome Browser database: update 2010
Brooke Rhead et al.
NUCLEIC ACIDS RESEARCH (2010)
Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species
Robert K. Bradley et al.
PLOS BIOLOGY (2010)
The Role of Nucleosome Positioning in the Evolution of Gene Regulation
Alexander M. Tsankov et al.
PLOS BIOLOGY (2010)
Evolutionary Mirages: Selection on Binding Site Composition Creates the Illusion of Conserved Grammars in Drosophila Enhancers
Richard W. Lusk et al.
PLOS GENETICS (2010)
G plus C content dominates intrinsic nucleosome occupancy
Desiree Tillo et al.
BMC BIOINFORMATICS (2009)
Poly(dA:dT) tracts: major determinants of nucleosome organization
Eran Segal et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)
The DNA-encoded nucleosome organization of a eukaryotic genome
Noam Kaplan et al.
NATURE (2009)
Histone modifications at human enhancers reflect global cell-type-specific gene expression
Nathaniel D. Heintzman et al.
NATURE (2009)
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
Mitchell Guttman et al.
NATURE (2009)
Population genomics of domestic and wild yeasts
Gianni Liti et al.
NATURE (2009)
ChIP-seq accurately predicts tissue-specific activity of enhancers
Axel Visel et al.
NATURE (2009)
Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites
Shin Sasaki et al.
SCIENCE (2009)
What controls nucleosome positions?
Eran Segal et al.
TRENDS IN GENETICS (2009)
Dynamic regulation of nucleosome positioning in the human genome
Dustin E. Schones et al.
CELL (2008)
Inferring natural selection on fine-scale chromatin organization in yeast
G. A. Babbitt et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Nucleosome organization in the Drosophila genome
Travis N. Mavrich et al.
NATURE (2008)
Evolutionary footprints of nucleosome positions in yeast
Stefan Washietl et al.
TRENDS IN GENETICS (2008)
Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
Yair Field et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
The Impact of the Nucleosome Code on Protein-Coding Sequence Evolution in Yeast
Tobias Warnecke et al.
PLOS GENETICS (2008)
A high- resolution atlas of nucleosome occupancy in yeast
William Lee et al.
NATURE GENETICS (2007)
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Tarjei S. Mikkelsen et al.
NATURE (2007)
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Ewan Birney et al.
NATURE (2007)
Genome-wide transcription and the implications for genomic organization
Philipp Kapranov et al.
NATURE REVIEWS GENETICS (2007)
Frequent gain and loss of functional transcription factor binding sites
Scott W. Doniger et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Empirical fitness landscapes reveal accessible evolutionary paths
Frank J. Poelwijk et al.
NATURE (2007)
Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions
Eric S. Haag
GENETICA (2007)
Evolution of alternative transcriptional circuits with identical logic
Annie E. Tsong et al.
NATURE (2006)
A genomic code for nucleosome positioning
Eran Segal et al.
NATURE (2006)
Extensive low-affinity transcriptional interactions in the yeast genome
Amos Tanay
GENOME RESEARCH (2006)
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
KD MacIsaac et al.
BMC BIOINFORMATICS (2006)
Genome-scale identification of nucleosome positions in S-cerevisiae
GC Yuan et al.
SCIENCE (2005)
Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast
A Tanay et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Phylogenetic estimation of context-dependent substitution rates by maximum likelihood
A Siepel et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution
DG Hwang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Transcriptional regulatory code of a eukaryotic genome
CT Harbison et al.
NATURE (2004)
Finding functional features in Saccharomyces genomes by phylogenetic footprinting
P Cliften et al.
SCIENCE (2003)
Sequencing and comparison of yeast species to identify genes and regulatory elements
M Kellis et al.
NATURE (2003)
Factor graphs and the sum-product algorithm
FR Kschischang et al.
IEEE TRANSACTIONS ON INFORMATION THEORY (2001)
A population genetics model for multiple quantitative traits exhibiting pleiotropy and epistasis
CF Taylor et al.
JOURNAL OF THEORETICAL BIOLOGY (2000)