Related references
Note: Only part of the references are listed.Toward a system-level understanding of microRNA pathway via mathematical modeling
Xia Wang et al.
BIOSYSTEMS (2010)
Enhancement of the Seed-Target Recognition Step in RNA Silencing by a PIWI/MID Domain Protein
James S. Parker et al.
MOLECULAR CELL (2009)
Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes
Yanli Wang et al.
NATURE (2009)
Revisiting the principles of microRNA target recognition and mode of action
Peter Brodersen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
Getting to the root of miRNA-Mediated gene silencing
Ana Eulalio et al.
CELL (2008)
Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex
Yanli Wang et al.
NATURE (2008)
Structure of the guide-strand-containing argonaute silencing complex
Yanli Wang et al.
NATURE (2008)
Solution structure of a let-7 miRNA : lin-41 mRNA complex from C. elegans
Mirko Cevec et al.
NUCLEIC ACIDS RESEARCH (2008)
Host immune system gene targeting by a viral miRNA
Noam Stern-Ginossar et al.
SCIENCE (2007)
Molecular basis for target RNA recognition and cleavage by human RISC
Stefan Ludwig Ameres et al.
CELL (2007)
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
Andrew Grimson et al.
MOLECULAR CELL (2007)
Sequence and expression differences underlie functional specialization of Arabidopsis MicroRNAs miR159 and miR319
Javier F. Palatnik et al.
DEVELOPMENTAL CELL (2007)
In silico selection of active siRNA
Volker Patzel
DRUG DISCOVERY TODAY (2007)
Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures
N. Morozova et al.
BIOINFORMATICS (2006)
Ligand affinities predicted with the MM/PBSA method:: Dependence on the simulation method and the force field
Aaron Weis et al.
JOURNAL OF MEDICINAL CHEMISTRY (2006)
The diverse functions of MicroRNAs in animal development and disease
Wigard P. Kloosterman et al.
DEVELOPMENTAL CELL (2006)
A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
Kevin C. Miranda et al.
CELL (2006)
Argonaute and RNA - getting into the groove
JJ Song et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
The widespread impact of mammalian microRNAs on mRNA repression and evolution
KKH Farh et al.
SCIENCE (2005)
Purified Argonaute2 and an siRNA form recombinant human RISC
FV Rivas et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)
Principles of MicroRNA-target recognition
J Brennecke et al.
PLOS BIOLOGY (2005)
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
BP Lewis et al.
CELL (2005)
MicroRNAs: Genomics, biogenesis, mechanism, and function
DP Bartel
CELL (2004)
Argonaute2 is the catalytic engine of mammalian RNAi
JD Liu et al.
SCIENCE (2004)
Crystal structure of argonaute and its implications for RISC slicer activity
JJ Song et al.
SCIENCE (2004)
Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity
JS Parker et al.
EMBO JOURNAL (2004)
Dynamite:: a simple way to gain insight into protein motions
CP Barrett et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA
MW Jones-Rhoades et al.
MOLECULAR CELL (2004)
Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain
A Lingel et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
The RNA-induced silencing complex is a Mg2+-dependent endonuclease
DS Schwarz et al.
CURRENT BIOLOGY (2004)
Exploring protein native states and large-scale conformational changes with a modified generalized born model
A Onufriev et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
RISC is a 5′ phosphomonoester-producing RNA endonuclease
J Martinez et al.
GENES & DEVELOPMENT (2004)
Prediction of mammalian microRNA targets
BP Lewis et al.
CELL (2003)
Size selective recognition of siRNA by an RNA silencing suppressor
JM Vargason et al.
CELL (2003)
Role of microRNAs in plant and animal development
JC Carrington et al.
SCIENCE (2003)
Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes.: Minor groove binding between 4′,6-diamidino-2-phenylindole and DNA duplexes in solution
N Spacková et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)
The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes
JJ Song et al.
NATURE STRUCTURAL BIOLOGY (2003)
Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50
S Hayward et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2002)
Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
EC Lai
NATURE GENETICS (2002)
Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate
SM Elbashir et al.
EMBO JOURNAL (2001)
Calculations of the absolute free energies of binding between RNA and metal ions using molecular dynamics simulations and continuum electrostatics
V Tsui et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2001)
RNA interference is mediated by 21-and 22-nucleotide RNAs
SM Elbashir et al.
GENES & DEVELOPMENT (2001)
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
PA Kollman et al.
ACCOUNTS OF CHEMICAL RESEARCH (2000)
Binding of a diverse set of ligands to avidin and streptavidin: An accurate quantitative prediction of their relative affinities by a combination of molecular mechanics and continuum solvent models
B Kuhn et al.
JOURNAL OF MEDICINAL CHEMISTRY (2000)
Protein thermal stability: insights from atomic displacement parameters (B values)
S Parthasarathy et al.
PROTEIN ENGINEERING (2000)