Related references
Note: Only part of the references are listed.Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
Robert Schuetz et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M. Feist et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
TXNIP regulates peripheral glucose metabolism in humans
Hemang Parikh et al.
PLOS MEDICINE (2007)
Global reconstruction of the human metabolic network based on genomic and bibliomic data
Natalie C. Duarte et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
Scott A. Becker et al.
NATURE PROTOCOLS (2007)
NCBI GEO: mining tens of millions of expression profiles - database and tools update
Tanya Barrett et al.
NUCLEIC ACIDS RESEARCH (2007)
Observing metabolic functions at the genome scale
Jean-Marc Schwartz et al.
GENOME BIOLOGY (2007)
GRB14, GPD1, and GDF8 as potential network collaborators in weight loss-induced improvements in insulin action in human skeletal muscle
Jung-Jun Park et al.
PHYSIOLOGICAL GENOMICS (2006)
Transcriptional regulatory networks in bacteria: from input signals to output responses
Aswin S. N. Seshasayee et al.
CURRENT OPINION IN MICROBIOLOGY (2006)
Comparison of Affymetrix GeneChip expression measures
RA Irizarry et al.
BIOINFORMATICS (2006)
Towards multidimensional genome annotation
JL Reed et al.
NATURE REVIEWS GENETICS (2006)
Evaluation of methods for oligonucleotide array data via quantitative real-time PCR
LX Qin et al.
BMC BIOINFORMATICS (2006)
Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans
Helga David et al.
GENOME BIOLOGY (2006)
The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states
CL Barrett et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
SS Fong et al.
GENOME RESEARCH (2005)
In silico design and adaptive evolution of Escherichia coli for production of lactic acid
SS Fong et al.
BIOTECHNOLOGY AND BIOENGINEERING (2005)
Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes
SS Fong et al.
NATURE GENETICS (2004)
Integration of gene expression data into genome-scale metabolic models
M Åkesson et al.
METABOLIC ENGINEERING (2004)
Genome-scale in silico models of E-coli have multiple equivalent phenotypic states:: Assessment of correlated reaction subsets that comprise network states
JL Reed et al.
GENOME RESEARCH (2004)
Genome-scale models of microbial cells: Evaluating the consequences of constraints
ND Price et al.
NATURE REVIEWS MICROBIOLOGY (2004)
Integrating high-throughput and computational data elucidates bacterial networks
MW Covert et al.
NATURE (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
OptKnock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
AP Burgard et al.
BIOTECHNOLOGY AND BIOENGINEERING (2003)
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
BM Bolstad et al.
BIOINFORMATICS (2003)
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
RU Ibarra et al.
NATURE (2002)
Transcriptional regulation in constraints-based metabolic models of Escherichia coli
MW Covert et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)