Related references
Note: Only part of the references are listed.Towards zoomable multidimensional maps of the cell
Zhenjun Hu et al.
NATURE BIOTECHNOLOGY (2007)
Large-scale mapping of human protein-protein interactions by mass spectrometry
Rob M. Ewing et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data
Nir Yosef et al.
BIOINFORMATICS (2007)
Differentially androgen-modulated genes in ovarian epithelial cells from BRCA mutation carriers and control patients predict ovarian cancer survival and disease progression
A. Motamed-Khorasani et al.
ONCOGENE (2007)
New developments in the InterPro database
Nicola J. Mulder et al.
NUCLEIC ACIDS RESEARCH (2007)
Relating three-dimensional structures to protein networks provides evolutionary insights
Philip M. Kim et al.
SCIENCE (2006)
Protein homology network families reveal step-wise diversification of type III and type IV secretion systems
Duccio Medini et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions
Raja Jothi et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
BLAST: improvements for better sequence analysis
Jian Ye et al.
NUCLEIC ACIDS RESEARCH (2006)
Integrated assessment and prediction of transcription factor binding
Andreas Beyer et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration
Janghoo Lim et al.
CELL (2006)
Large-scale identification of protein-protein interaction of Escherichia coli K-12
M Arifuzzaman et al.
GENOME RESEARCH (2006)
XcisClique: analysis of regulatory bicliques
Amrita Pati et al.
BMC BIOINFORMATICS (2006)
Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale
HQ Li et al.
BIOINFORMATICS (2006)
How scale-free are biological networks
Raya Khanin et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2006)
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin et al.
NATURE (2006)
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan et al.
NATURE (2006)
Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: Large-scale organization and robustness
D Li et al.
PROTEOMICS (2006)
Predicting domain-domain interactions using a parsimony approach
Katia S. Guimaraes et al.
GENOME BIOLOGY (2006)
A protein interaction network of the malaria parasite Plasmodium falciparum
DJ LaCount et al.
NATURE (2005)
Towards a proteome-scale map of the human protein-protein interaction network
JF Rual et al.
NATURE (2005)
A human protein-protein interaction network:: A resource for annotating the proteome
U Stelzl et al.
CELL (2005)
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
KC Gunsalus et al.
NATURE (2005)
Probabilistic model of the human protein-protein interaction network
DR Rhodes et al.
NATURE BIOTECHNOLOGY (2005)
Inferring protein-protein interactions through high-throughput interaction data from diverse organisms
Y Liu et al.
BIOINFORMATICS (2005)
Effect of sampling on topology predictions of protein-protein interaction networks
JDJ Han et al.
NATURE BIOTECHNOLOGY (2005)
Identification and characterization of protein subcomplexes in yeast
J Hollunder et al.
PROTEOMICS (2005)
Filtering high-throughput protein-protein interaction data using a combination of genomic features
A Patil et al.
BMC BIOINFORMATICS (2005)
Statistical analysis of domains in interacting protein pairs
TMW Nye et al.
BIOINFORMATICS (2005)
Subnets of scale-free networks are not scale-free: Sampling properties of networks
MPH Stumpf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Interaction network containing conserved and essential protein complexes in Escherichia coli
G Butland et al.
NATURE (2005)
ProViz: protein interaction visualization and exploration
F Iragne et al.
BIOINFORMATICS (2005)
Inferring protein domain interactions from databases of interacting proteins
R Riley et al.
GENOME BIOLOGY (2005)
The ProDom database of protein domain families: more emphasis on 3D
C Bru et al.
NUCLEIC ACIDS RESEARCH (2005)
Evolution of the multifunctional protein tyrosine phosphatase family
B Pils et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
A map of the interactome network of the metazoan C-elegans
SM Li et al.
SCIENCE (2004)
Topological generalizations of network motifs
N Kashtan et al.
PHYSICAL REVIEW E (2004)
Modeling interactome: scale-free or geometric?
N Przulj et al.
BIOINFORMATICS (2004)
Protein interaction networks by proteome peptide scanning
C Landgraf et al.
PLOS BIOLOGY (2004)
Protein complex prediction via cost-based clustering
AD King et al.
BIOINFORMATICS (2004)
Duplication and divergence: The evolution of new genes and old ideas
JS Taylor et al.
ANNUAL REVIEW OF GENETICS (2004)
Gene regulatory network growth by duplication
SA Teichmann et al.
NATURE GENETICS (2004)
A Drosophila protein-interaction map centered on cell-cycle regulators
CA Stanyon et al.
GENOME BIOLOGY (2004)
Modular decomposition of protein-protein interaction networks
J Gagneur et al.
GENOME BIOLOGY (2004)
A protein interaction map of Drosophila melanogaster
L Giot et al.
SCIENCE (2003)
Assigning function to yeast proteins by integration of technologies
TR Hazbun et al.
MOLECULAR CELL (2003)
Evolutionary conservation of motif constituents in the yeast protein interaction network
S Wuchty et al.
NATURE GENETICS (2003)
Integrative approach for computationally inferring protein domain interactions
SK Ng et al.
BIOINFORMATICS (2003)
Topological structure analysis of the protein-protein interaction network in budding yeast
DB Bu et al.
NUCLEIC ACIDS RESEARCH (2003)
An automated method for finding molecular complexes in large protein interaction networks
GD Bader et al.
BMC BIOINFORMATICS (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo
PB Mason et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Osprey: a network visualization system
BJ Breitkreutz et al.
GENOME BIOLOGY (2003)
Transcriptional regulatory networks in Saccharomyces cerevisiae
TI Lee et al.
SCIENCE (2002)
Network motifs: Simple building blocks of complex networks
R Milo et al.
SCIENCE (2002)
Analyzing yeast protein-protein interaction data obtained from different sources
GD Bader et al.
NATURE BIOTECHNOLOGY (2002)
Inferring domain-domain interactions from protein-protein interactions
MH Deng et al.
GENOME RESEARCH (2002)
Specificity and stability in topology of protein networks
S Maslov et al.
SCIENCE (2002)
A comprehensive two-hybrid analysis to explore the yeast protein interactome
T Ito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
A DNA damage-induced p53 serine 392 kinase complex contains CK2, hSpt16, and SSRP1
DM Keller et al.
MOLECULAR CELL (2001)
The protein-protein interaction map of Helicobacter pylori
JC Rain et al.
NATURE (2001)
Genomic expression programs in the response of yeast cells to environmental changes
AP Gasch et al.
MOLECULAR BIOLOGY OF THE CELL (2000)
Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
T Ito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)