4.6 Article

Formation and Growth of Oligomers: A Monte Carlo Study of an Amyloid Tau Fragment

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Simulation of Top7-CFr: A transient helix extension guides folding

Sandipan Mohanty et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Spontaneous β-barrel formation:: An all-atom Monte Carlo study of Aβ16-22 oligomerization

Anders Irbaeck et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Chemistry, Multidisciplinary

Thermodynamics and kinetics of aggregation for the GNNQQNY peptide

Birgit Strodel et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Biochemical Research Methods

Structural reorganisation and potential toxicity of oligomeric species formed during the assembly of amyloid fibrils

Mookyung Cheon et al.

PLOS COMPUTATIONAL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

The length dependence of the PolyQ-mediated protein aggregation

Sunjay Barton et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Multidisciplinary Sciences

Atomic structures of amyloid cross-β spines reveal varied steric zippers

Michael R. Sawaya et al.

NATURE (2007)

Article Multidisciplinary Sciences

Monomer adds to preformed structured oligomers of Aβ-peptides by a two-stage dock-lock mechanism

Phuong H. Nguyen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Aggregating the amyloid Aβ11-25 peptide into a four-stranded β-sheet structure

Genevive Boucher et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Structures of soluble amyloid oligomers from computer simulations

Adrien Melquiond et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Review Biochemistry & Molecular Biology

Simulations as analytical tools to understand protein aggregation and predict amyloid conformation

Buyong Ma et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2006)

Article Chemistry, Multidisciplinary

PROFASI:: A Monte Carlo simulation package for protein folding and aggregation

Anders Irback et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2006)

Article Multidisciplinary Sciences

The physical basis of how prion conformations determine strain phenotypes

Motomasa Tanaka et al.

NATURE (2006)

Article Multidisciplinary Sciences

Molecular dynamics analyses of cross-β-spine steric zipper models:: β-sheet twisting and aggregation

Luciana Esposito et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

An inhibitor of tau hyperphosphorylation prevents severe motor impairments in tau transgenic mice

Sylvie Le Corre et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Review Biophysics

Structure of core domain of fibril-forming PHF/Tau fragments

H Inouye et al.

BIOPHYSICAL JOURNAL (2006)

Article Chemistry, Multidisciplinary

Atomic-level description of amyloid β-dimer formation

S Gnanakaran et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Biochemistry & Molecular Biology

Global hairpin folding of tau in solution

S Jeganathan et al.

BIOCHEMISTRY (2006)

Review Chemistry, Multidisciplinary

GROMACS: Fast, flexible, and free

D Van der Spoel et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)

Article Chemistry, Multidisciplinary

Experimental evidence for the reorganization of β-strands within aggregates of the aβ(16-22) peptide

SA Petty et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)

Article Multidisciplinary Sciences

Intersheet rearrangement of polypeptides during nucleation of β-sheet aggregates

SA Petty et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Dissecting the mechanical unfolding of ubiquitin

A Irbäck et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Tau suppression in a neurodegenerative mouse model improves memory function

K SantaCruz et al.

SCIENCE (2005)

Article Biochemistry & Molecular Biology

Sequence dependence of amyloid fibril formation: Insights from molecular dynamics simulations

ML de la Paz et al.

JOURNAL OF MOLECULAR BIOLOGY (2005)

Article Biophysics

Folding thermodynamics of peptides

A Irbäck et al.

BIOPHYSICAL JOURNAL (2005)

Article Biochemistry & Molecular Biology

Probing the initial stage of aggregation of the Aβ10-35-protein:: Assessing the propensity for peptide dimerization

B Tarus et al.

JOURNAL OF MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

FTIR reveals structural differences between native β-sheet proteins and amyloid fibrils

G Zandomeneghi et al.

PROTEIN SCIENCE (2004)

Article Chemistry, Multidisciplinary

In silico assembly of Alzheimer's Aβ16-22 peptide into β-sheets

S Santini et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)

Article Multidisciplinary Sciences

Kinetic control of dimer structure formation in amyloid fibrillogenesis

W Hwang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biophysics

Sampling the self-assembly pathways of KFFE hexamers

GH Wei et al.

BIOPHYSICAL JOURNAL (2004)

Article Biochemistry & Molecular Biology

Molecular dynamics studies of the process of amyloid aggregation of peptide fragments of transthyretin

E Paci et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Pathway complexity of Alzheimer's β-amyloid Aβ16-22 peptide assembly

S Santini et al.

STRUCTURE (2004)

Article Multidisciplinary Sciences

Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides

HD Nguyen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

The formation of straight and twisted filaments from short tau peptides

WJ Goux et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

Surface-decoration of microtubules by human Tau

RA Santarella et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Chemistry, Multidisciplinary

UCSF chimera - A visualization system for exploratory research and analysis

EF Pettersen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Chemistry, Multidisciplinary

The organization and assembly of β-sheet formed by a prion peptide in solution:: An isotope-edited FTIR study

RAGD Silva et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)

Article Biophysics

Thermodynamics of α- and β-structure formation in proteins

A Irbäck et al.

BIOPHYSICAL JOURNAL (2003)

Article Multidisciplinary Sciences

Tau filaments from human brain and from in vitro assembly of recombinant protein show cross-β structure

J Berriman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Dissecting the assembly of Aβ16-22 amyloid peptides into antiparallel β sheets

DK Klimov et al.

STRUCTURE (2003)

Article Multidisciplinary Sciences

A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR

AT Petkova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy

CM Rienstra et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

The protofilament structure of insulin amyloid fibrils

JL Jimenez et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Twist and shear in β-sheets and β-ribbons

BK Ho et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

Structure determination of micelle-like intermediates in amyloid β-protein fibril assembly by using small angle neutron scattering

W Yong et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Hierarchical self-assembly of chiral rod-like molecules as a model for peptide β-sheet tapes, ribbons, fibrils, and fibers

A Aggeli et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Chemistry, Physical

Monte Carlo update for chain molecules:: Biased Gaussian steps in torsional space

G Favrin et al.

JOURNAL OF CHEMICAL PHYSICS (2001)

Article Multidisciplinary Sciences

Assembly of τ protein into Alzheimer paired helical filaments depends on a local sequence motif (306VQIVYK311) forming β structure

M von Bergen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)