Related references
Note: Only part of the references are listed.Hyperstability and Substrate Promiscuity in Laboratory Resurrections of Precambrian β-Lactamases
Valeria A. Risso et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)
Evolutionary biochemistry: revealing the historical and physical causes of protein properties
Michael J. Harms et al.
NATURE REVIEWS GENETICS (2013)
Experimental evidence for the thermophilicity of ancestral life
Satoshi Akanuma et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
On the Origin and Evolution of Thermophily: Reconstruction of Functional Precambrian Enzymes from Ancestors of Bacillus
Joanne K. Hobbs et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Single-molecule paleoenzymology probes the chemistry of resurrected enzymes
Raul Perez-Jimenez et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Features and development of Coot
P. Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
CD-HIT Suite: a web server for clustering and comparing biological sequences
Ying Huang et al.
BIOINFORMATICS (2010)
Analyzing protein structure and function using ancestral gene reconstruction
Michael J. Harms et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2010)
Permissive Secondary Mutations Enable the Evolution of Influenza Oseltamivir Resistance
Jesse D. Bloom et al.
SCIENCE (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Genome Sequence of the Plant Growth Promoting Endophytic Bacterium Enterobacter sp 638
Safiyh Taghavi et al.
PLOS GENETICS (2010)
Pervasive Cryptic Epistasis in Molecular Evolution
Mark Lunzer et al.
PLOS GENETICS (2010)
Structure, Stability, and Folding of Ribonuclease H1 from the Moderately Thermophilic Chlorobium tepidum: Comparison with Thermophilic and Mesophilic Homologues
Kathleen Ratcliff et al.
BIOCHEMISTRY (2009)
Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes
Takashi Tadokoro et al.
FEBS JOURNAL (2009)
Cronobacter gen nov, a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen nov, comb nov, Cronobacter malonaticus sp nov, Cronobacter turicensis sp nov, Cronobacter muytjensii sp nov, Cronobacter dublinensis sp nov, Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp dublinensis subsp nov, Cronobacter dublinensis subsp lausannensis subsp nov and Cronobacter dublinensis subsp lactaridi subsp nov
Carol Iversen et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2008)
Palaeotemperature trend for Precambrian life inferred from resurrected proteins
Eric A. Gaucher et al.
NATURE (2008)
OPINION Neutralism and selectionism: a network-based reconciliation
Andreas Wagner
NATURE REVIEWS GENETICS (2008)
Structural and thermodynamic analyses of Escherichia coli RNase HI variant with quintuple thermostabilizing mutations
Mitsuru Haruki et al.
FEBS JOURNAL (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Phaser crystallographic software
Airlie J. McCoy et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)
Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI
Takashi Tadokoro et al.
BIOCHEMISTRY (2007)
TimeTree: a public knowledge-base of divergence times among organisms
S. Blair Hedges et al.
BIOINFORMATICS (2006)
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
Maria Anisimova et al.
SYSTEMATIC BIOLOGY (2006)
Lessons in stability from thermophilic proteins
Abbas Razvi et al.
PROTEIN SCIENCE (2006)
In vivo molecular evolution reveals biophysical origins of organismal fitness
Rafael Counago et al.
MOLECULAR CELL (2006)
Aphid-symbiotic bacteria cultured in insect cell lines
AC Darby et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
ProtTest: selection of best-fit models of protein evolution
F Abascal et al.
BIOINFORMATICS (2005)
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
KD Pruitt et al.
NUCLEIC ACIDS RESEARCH (2005)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Role of residual structure in the unfolded state of a thermophilic protein
S Robic et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Inferring the palaeoenvironment of ancient bacteria on the basis of resurrected proteins
EA Gaucher et al.
NATURE (2003)
Energetic evidence for formation of a pH-dependent hydrophobic cluster in the denatured state of Thermus thermophilus ribonuclease H
M Guzman-Casado et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Contributions of folding cores to the thermostabilities of two ribonucleases H
S Robic et al.
PROTEIN SCIENCE (2002)
Comparison of the folding processes of T-thermophilus and E-coli ribonucleases H
J Hollien et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Why are proteins so robust to site mutations?
DM Taverna et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Why are proteins marginally stable?
DM Taverna et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2002)
Thermodynamic differences among homologous thermophilic and mesophilic proteins
S Kumar et al.
BIOCHEMISTRY (2001)
How do thermophilic proteins deal with heat?
S Kumar et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2001)
Developmental system drift and flexibility in evolutionary trajectories
JR True et al.
EVOLUTION & DEVELOPMENT (2001)