4.6 Review

Proteomics and Systems Biology: Current and Future Applications in the Nutritional Sciences

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

mzML-a Community Standard for Mass Spectrometry Data

Lennart Martens et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Review Biochemical Research Methods

Discussion on common data analysis strategies used in MS-based proteomics

Rune Matthiesen et al.

PROTEOMICS (2011)

Article Chemistry, Analytical

Separation of Peptide Isomers with Variant Modified Sites by High-Resolution Differential Ion Mobility Spectrometry

Alexandre A. Shvartsburg et al.

ANALYTICAL CHEMISTRY (2010)

Article Mathematical & Computational Biology

Patterns of human gene expression variance show strong associations with signaling network hierarchy

Kakajan Komurov et al.

BMC SYSTEMS BIOLOGY (2010)

Review Biochemical Research Methods

Proteomics in Nutrition: Status Quo and Outlook for Biomarkers and Bioactives

Martin Kussmann et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

The SILAC Fly Allows for Accurate Protein Quantification in Vivo

Matthias D. Sury et al.

MOLECULAR & CELLULAR PROTEOMICS (2010)

Review Genetics & Heredity

Towards genome-scale signalling-network reconstructions

Daniel R. Hyduke et al.

NATURE REVIEWS GENETICS (2010)

Article Multidisciplinary Sciences

Urinary Collagen Fragments Are Significantly Altered in Diabetes: A Link to Pathophysiology

David M. Maahs et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Blueprint for antimicrobial hit discovery targeting metabolic networks

Y. Shen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes

Aleksej Zelezniak et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Article Chemistry, Analytical

Characterization of Phosphorylated Peptides Using Traveling Wave-Based and Drift Cell Ion Mobility Mass Spectrometry

Konstantinos Thalassinos et al.

ANALYTICAL CHEMISTRY (2009)

Article Engineering, Biomedical

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

John R. Yates et al.

Annual Review of Biomedical Engineering (2009)

Article Biochemical Research Methods

Protein Quantification in Label-Free LC-MS Experiments

Timothy Clough et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

Proteomic Identification of Salivary Biomarkers of Type-2 Diabetes

Paturi V. Rao et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Review Biochemical Research Methods

Mass Spectrometry Based Targeted Protein Quantification: Methods and Applications

Sheng Pan et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

Evaluation of Urine Proteome Pattern Analysis for Its Potential To Reflect Coronary Artery Atherosclerosis in Symptomatic Patients

Constantin von zur Muhlen et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Review Biochemistry & Molecular Biology

Applications of genome-scale metabolic reconstructions

Matthew A. Oberhardt et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Review Genetics & Heredity

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

Matthias Gstaiger et al.

NATURE REVIEWS GENETICS (2009)

Review Genetics & Heredity

Stochastic modelling for quantitative description of heterogeneous biological systems

Darren J. Wilkinson

NATURE REVIEWS GENETICS (2009)

Article Biochemical Research Methods

Identification of Potential Pathway Mediation Targets in Toll-like Receptor Signaling

Fan Li et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Review Biochemical Research Methods

Nutritional Systems Biology Modeling: From Molecular Mechanisms to Physiology

Albert A. de Graaf et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Application of metabolic flux analysis to identify the mechanisms of free fatty acid toxicity to human hepatoma cell line

Shireesh Srivastava et al.

BIOTECHNOLOGY AND BIOENGINEERING (2008)

Article Biochemical Research Methods

Stable isotopic labeling by amino acids in cultured primary neurons

Daniel S. Spellman et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Review Biochemistry & Molecular Biology

Selected reaction monitoring for quantitative proteomics: a tutorial

Vinzenz Lange et al.

MOLECULAR SYSTEMS BIOLOGY (2008)

Review Cell Biology

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics

Eric W. Deutsch et al.

PHYSIOLOGICAL GENOMICS (2008)

Article Multidisciplinary Sciences

The implications of human metabolic network topology for disease comorbidity

D. -S. Lee et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

Aorta protein networks in marginal and acute zinc deficiency

John H. Beattie et al.

PROTEOMICS (2008)

Article Biochemical Research Methods

Analysis of the urine proteome in patients with pancreatic ductal adenocarcinoma

Mark E. Weeks et al.

PROTEOMICS CLINICAL APPLICATIONS (2008)

Article Biochemical Research Methods

Network Inference Algorithms Elucidate Nrf2 Regulation of Mouse Lung Oxidative Stress

Ronald C. Taylor et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Biochemical Research Methods

Urinary proteomic biomarkers on coronary artery disease

Lukas U. Zimmerli et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Article Biochemical Research Methods

Practical points in urinary proteomics

Visith Thongboonkerd

JOURNAL OF PROTEOME RESEARCH (2007)

Article Chemistry, Analytical

Label-free LC-MS/MS quantitative proteomics for large-scale biomarker discovery in complex samples

Yishai Levin et al.

JOURNAL OF SEPARATION SCIENCE (2007)

Article Biochemistry & Molecular Biology

The Edinburgh human metabolic network reconstruction and its functional analysis

Hongwu Ma et al.

MOLECULAR SYSTEMS BIOLOGY (2007)

Review Chemistry, Multidisciplinary

Multidimensional separations-based shotgun proteomics

Marjorie L. Fournier et al.

CHEMICAL REVIEWS (2007)

Article Multidisciplinary Sciences

The human disease network

Kwang-Il Goh et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Chemistry, Analytical

Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer

Graeme C. McAlister et al.

ANALYTICAL CHEMISTRY (2007)

Article Biochemical Research Methods

Differential protein expression profile in the intestinal epithelium from patients with inflammatory bowel disease

Anna Shkoda et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Multidisciplinary Sciences

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Natalie C. Duarte et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

Scott A. Becker et al.

NATURE PROTOCOLS (2007)

Article Chemistry, Multidisciplinary

CILAT - a new reagent for quantitative proteomics

Shuwei Li et al.

CHEMICAL COMMUNICATIONS (2007)

Article Endocrinology & Metabolism

Computational model of in vivo human energy metabolism during semistarvation and refeeding

Kevin D. Hall

AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2006)

Article Biochemical Research Methods

Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer

B Macek et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Review Multidisciplinary Sciences

Review - Mass spectrometry and protein analysis

B Domon et al.

SCIENCE (2006)

Review Biochemistry & Molecular Biology

Mass spectrometry-based proteomics turns quantitative

SE Ong et al.

NATURE CHEMICAL BIOLOGY (2005)

Article Biochemical Research Methods

Dietary effects of copper and iron deficiency on rat intestine: A differential display proteome analysis

A Tosco et al.

JOURNAL OF PROTEOME RESEARCH (2005)

Article Biochemical Research Methods

The Orbitrap: a new mass spectrometer

QZ Hu et al.

JOURNAL OF MASS SPECTROMETRY (2005)

Article Multidisciplinary Sciences

Uncovering transcriptional regulation of metabolism by using metabolic network topology

KR Patil et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemical Research Methods

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

PL Ross et al.

MOLECULAR & CELLULAR PROTEOMICS (2004)

Article Chemistry, Analytical

Interfacing the orbitrap mass analyzer to an electrospray ion source

M Hardman et al.

ANALYTICAL CHEMISTRY (2003)

Review Multidisciplinary Sciences

Systems biology: A brief overview

H Kitano

SCIENCE (2002)

Article Multidisciplinary Sciences

Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology

SP Gygi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)