3.9 Article

Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31

Journal

STANDARDS IN GENOMIC SCIENCES
Volume 9, Issue 1, Pages 42-56

Publisher

GENOMIC STAND CONSORT
DOI: 10.4056/sigs.4227894

Keywords

Lysinibacillus sphaericus OT4b.31; DNA homology; de novo assembly; heavy metal tolerance; Sip1A coleopteran toxin

Funding

  1. Instituto Colombiano para el fomento de la Investigacion Francisco Jose de Caldas, Colciencias [1204-452-21129]
  2. Centro de Investigaciones Microbiologicas - CIMIC laboratory

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Lysinibacillus sphaericus strain OT4b.31 is a native Colombian strain having no larvicidal activity against Culex quinquefasciatus and is widely applied in the bioremediation of heavy-metal polluted environments. Strain OT4b.31 was placed between DNA homology groups III and IV. By gap-filling and alignment steps, we propose a 4,096,672 bp chromosomal scaffold. The whole genome (consisting of 4,856,302 bp long, 94 contigs and 4,846 predicted protein-coding sequences) revealed differences in comparison to the L. sphaericus C3-41 genome, such as syntenial relationships, prophages and putative mosquitocidal toxins. Sphaericolysin B354, the coleopteran toxin Sip1A and heavy metal resistance clusters from nik, ars, czc, cop, chr, czr and cad operons were identified. Lysinibacillus sphaericus OT4b.31 has applications not only in bioremediation efforts, but also in the biological control of agricultural pests.

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