Journal
STANDARDS IN GENOMIC SCIENCES
Volume 1, Issue 1, Pages 63-67Publisher
GENOMIC STAND CONSORT
DOI: 10.4056/sigs.632
Keywords
Joint Genome Institute; gene prediction; functional annotation; GeneMark; Metagene; tRNA-Scan; RNAmmer; Rfam; IMG-ER
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Funding
- US Department of Energy Office of Science, Biological and Environmental Research
- University of California, Lawrence Livermore National Laboratory [W-7405-Eng-48]
- Lawrence Berkeley National Laboratory [DE-AC02-05CH11231]
- Los Alamos National Laboratory [DE-AC02-06NA25396]
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The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome [1] (IMG) system. DOE-JGI MAP annotation is applied on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via the IMG ER submission site. Users can submit the sequence datasets consisting of one or more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein coding and RNA genes, as well as repeats and assignment of product names to these genes.
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