Related references
Note: Only part of the references are listed.PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
Jinpu Jin et al.
NUCLEIC ACIDS RESEARCH (2017)
KEGG: new perspectives on genomes, pathways, diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2017)
50 years of Arabidopsis research: highlights and future directions
Nicholas J. Provart et al.
NEW PHYTOLOGIST (2016)
Genome-Wide Analysis of Alternative Splicing during Development and Drought Stress in Maize
Shawn R. Thatcher et al.
PLANT PHYSIOLOGY (2016)
Abiotic Stress Signaling and Responses in Plants
Jian-Kang Zhu
CELL (2016)
Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism
Carmen M. Perez-Delgado et al.
JOURNAL OF EXPERIMENTAL BOTANY (2016)
Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings
Xianglan Wang et al.
NATURE GENETICS (2016)
Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture
Pieter Clauw et al.
PLANT CELL (2016)
Integration of omic networks in a developmental atlas of maize
Justin W. Walley et al.
SCIENCE (2016)
Transcription Factors and Plants Response to Drought Stress: Current Understanding and Future Directions
Rohit Joshi et al.
FRONTIERS IN PLANT SCIENCE (2016)
Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii
Feng Zhang et al.
SCIENTIFIC REPORTS (2016)
A survey of best practices for RNA-seq data analysis
Ana Conesa et al.
GENOME BIOLOGY (2016)
RNA Sequencing of Laser-Capture Microdissected Compartments of the Maize Kernel Identifies Regulatory Modules Associated with Endosperm Cell Differentiation
Junpeng Zhan et al.
PLANT CELL (2015)
NAC transcription factors in plant multiple abiotic stress responses: progress and prospects
Hongbo Shao et al.
FRONTIERS IN PLANT SCIENCE (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Non-canonical translation start sites in the TMEM16A chloride channel
Elvira Sondo et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Functional mechanisms of drought tolerance in subtropical maize (Zea mays L.) identified using genome-wide association mapping
Nepolean Thirunavukkarasu et al.
BMC GENOMICS (2014)
A Special Issue on Plant Stress Biology: From Model Species to Crops
Wei Li et al.
MOLECULAR PLANT (2014)
Machine Learning-Based Differential Network Analysis: A Study of Stress-Responsive Transcriptomes in Arabidopsis
Chuang Ma et al.
PLANT CELL (2014)
Global Dissection of Alternative Splicing in Paleopolyploid Soybean
Yanting Shen et al.
PLANT CELL (2014)
Systems biology-based approaches toward understanding drought tolerance in food crops
Sudisha Jogaiah et al.
CRITICAL REVIEWS IN BIOTECHNOLOGY (2013)
Network analysis of GWAS data
Mark D. M. Leiserson et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2013)
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
Simon Anders et al.
NATURE PROTOCOLS (2013)
Transcriptome Profile Analysis of Maize Seedlings in Response to High-salinity, Drought and Cold Stresses by Deep Sequencing
Xiaohui Shan et al.
PLANT MOLECULAR BIOLOGY REPORTER (2013)
Genome-wide association analysis for nine agronomic traits in maize under well-watered and water-stressed conditions
Yadong Xue et al.
THEORETICAL AND APPLIED GENETICS (2013)
Genome-Wide Analysis of ZmDREB Genes and Their Association with Natural Variation in Drought Tolerance at Seedling Stage of Zea mays L.
Shengxue Liu et al.
PLOS GENETICS (2013)
Catalyzing plant science research with RNA-seq
Laetitia B. B. Martin et al.
FRONTIERS IN PLANT SCIENCE (2013)
The US drought of 2012 in perspective: A call to action
J. S. Boyer et al.
GLOBAL FOOD SECURITY-AGRICULTURE POLICY ECONOMICS AND ENVIRONMENT (2013)
NAC transcription factors in plant abiotic stress responses
Kazuo Nakashima et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2012)
Small- and Large-Effect Quantitative Trait Locus Interactions Underlie Variation in Yeast Sporulation Efficiency
Kim Lorenz et al.
GENETICS (2012)
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
Yamile Marquez et al.
GENOME RESEARCH (2012)
Signal transduction during cold, salt, and drought stresses in plants
Guo-Tao Huang et al.
MOLECULAR BIOLOGY REPORTS (2012)
Comparative population genomics of maize domestication and improvement
Matthew B. Hufford et al.
NATURE GENETICS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Changes in the Contents of Metabolites and Enzyme Activities in Rice Plants Responding to Rhizoctonia solani Kuhn Infection: Activation of Glycolysis and Connection to Phenylpropanoid Pathway
J. Musembi Mutuku et al.
PLANT AND CELL PHYSIOLOGY (2012)
Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq
Akshay Kakumanu et al.
PLANT PHYSIOLOGY (2012)
Antagonistic Actions of HLH/bHLH Proteins Are Involved in Grain Length and Weight in Rice
Dany Heang et al.
PLOS ONE (2012)
Effects of abiotic stress on plants: a systems biology perspective
Grant R. Cramer et al.
BMC PLANT BIOLOGY (2011)
Yield-trait performance landscapes: from theory to application in breeding maize for drought tolerance
Carlos D. Messina et al.
JOURNAL OF EXPERIMENTAL BOTANY (2011)
Genetic association mapping identifies single nucleotide polymorphisms in genes that affect abscisic acid levels in maize floral tissues during drought
Tim L. Setter et al.
JOURNAL OF EXPERIMENTAL BOTANY (2011)
China's water crisis needs more than words
Chaoqing Yu et al.
NATURE (2011)
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
Chen Xie et al.
NUCLEIC ACIDS RESEARCH (2011)
miR172 signals are incorporated into the miR156 signaling pathway at the SPL3/4/5 genes in Arabidopsis developmental transitions
Jae-Hoon Jung et al.
PLANT MOLECULAR BIOLOGY (2011)
Genetic signals of origin, spread, and introgression in a large sample of maize landraces
Joost van Heerwaarden et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes
Rebecca M. Davidson et al.
PLANT GENOME (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
The evolution of gene duplications: classifying and distinguishing between models
Hideki Innan et al.
NATURE REVIEWS GENETICS (2010)
agriGO: a GO analysis toolkit for the agricultural community
Zhou Du et al.
NUCLEIC ACIDS RESEARCH (2010)
Genome-wide transcriptome analysis of two maize inbred lines under drought stress
Jun Zheng et al.
PLANT MOLECULAR BIOLOGY (2010)
Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae
Lorenzo Carretero-Paulet et al.
PLANT PHYSIOLOGY (2010)
Joint linkage-linkage disequilibrium mapping is a powerful approach to detecting quantitative trait loci underlying drought tolerance in maize
Yanli Lu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
Michael Freeling
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
Epigenetic regulation of stress responses in plants
Viswanathan Chinnusamy et al.
CURRENT OPINION IN PLANT BIOLOGY (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses
Alper Yilmaz et al.
PLANT PHYSIOLOGY (2009)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis
Heidi Rutschow et al.
PLANT PHYSIOLOGY (2008)
The Value of Nonmodel Genomes and an Example Using SynMap Within CoGe to Dissect the Hexaploidy that Predates the Rosids
Eric Lyons et al.
Tropical Plant Biology (2008)
ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets
Sylvain Foissac et al.
NUCLEIC ACIDS RESEARCH (2007)
Gene networks involved in drought stress response and tolerance
Kazuo Shinozaki et al.
JOURNAL OF EXPERIMENTAL BOTANY (2007)
The molecular genetics of crop domestication
John F. Doebley et al.
CELL (2006)
bHLH class transcription factors take centre stage in phytochrome signalling
PD Duek et al.
TRENDS IN PLANT SCIENCE (2005)
Evolution of plant resistance and tolerance to frost damage
AA Agrawal et al.
ECOLOGY LETTERS (2004)
Duplication and divergence: The evolution of new genes and old ideas
JS Taylor et al.
ANNUAL REVIEW OF GENETICS (2004)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Transcription factors in plant defense and stress responses
KB Singh et al.
CURRENT OPINION IN PLANT BIOLOGY (2002)
Arabidopsis thaliana GATA factors:: organisation, expression and DNA-binding characteristics
GR Teakle et al.
PLANT MOLECULAR BIOLOGY (2002)
GLK gene pairs regulate chloroplast development in diverse plant species
DW Fitter et al.
PLANT JOURNAL (2002)
A single domestication for maize shown by multilocus microsatellite genotyping
Y Matsuoka et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
BLAT - The BLAST-like alignment tool
WJ Kent
GENOME RESEARCH (2002)
Molecular and physiological approaches to maize improvement for drought tolerance
WB Bruce et al.
JOURNAL OF EXPERIMENTAL BOTANY (2002)