Related references
Note: Only part of the references are listed.Insights from 20 years of bacterial genome sequencing
Miriam Land et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2015)
Complete Genome Sequence of Herbaspirillum hiltneri N3 (DSM 17495), Isolated from Surface-Sterilized Wheat Roots
Dieval Guizelini et al.
GENOME ANNOUNCEMENTS (2015)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
GAGE-B: an evaluation of genome assemblers for bacterial organisms
Tanja Magoc et al.
BIOINFORMATICS (2013)
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith R. Bradnam et al.
GIGASCIENCE (2013)
Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation
Jonathan L. Klassen et al.
BMC GENOMICS (2012)
Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph
Zhenyu Li et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2012)
Efficient de novo assembly of large genomes using compressed data structures
Jared T. Simpson et al.
GENOME RESEARCH (2012)
GAGE: A critical evaluation of genome assemblies and assembly algorithms
Steven L. Salzberg et al.
GENOME RESEARCH (2012)
Draft Genome Sequence of Herbaspirillum lusitanum P6-12, an Endophyte Isolated from Root Nodules of Phaseolus vulgaris
Vinicius Almir Weiss et al.
JOURNAL OF BACTERIOLOGY (2012)
Revised Sequence and Annotation of the Rhodobacter sphaeroides 2.4.1 Genome
Wayne S. Kontur et al.
JOURNAL OF BACTERIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
De novo genome assembly: what every biologist should know
Monya Baker
NATURE METHODS (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
Plantagora: Modeling Whole Genome Sequencing and Assembly of Plant Genomes
Roger Barthelson et al.
PLOS ONE (2011)
Genome of Herbaspirillum seropedicae Strain SmR1, a Specialized Diazotrophic Endophyte of Tropical Grasses
Fabio O. Pedrosa et al.
PLOS GENETICS (2011)
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
GENOME RESEARCH (2009)
Aggressive assembly of pyrosequencing reads with mates
Jason R. Miller et al.
BIOINFORMATICS (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Genome assembly forensics: finding the elusive mis-assembly
Adam M. Phillippy et al.
GENOME BIOLOGY (2008)
Solving ambiguities in contig assembly of Idiomarina loihiensis L2TR chromosome by in silico analyses
Francois Collyn et al.
FEMS MICROBIOLOGY LETTERS (2007)
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
B Chevreux et al.
GENOME RESEARCH (2004)
Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes
CAH Roten et al.
NUCLEIC ACIDS RESEARCH (2002)
An Eulerian path approach to DNA fragment assembly
PA Pevzner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
J Besemer et al.
NUCLEIC ACIDS RESEARCH (2001)
Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes
AC Frank et al.
BIOINFORMATICS (2000)