Related references
Note: Only part of the references are listed.Coordinated Rates of Evolution between Interacting Plastid and Nuclear Genes in Geraniaceae
Jin Zhang et al.
PLANT CELL (2015)
Correlation between sequence divergence and polymorphism reveals similar evolutionary mechanisms acting across multiple timescales in a rapidly evolving plastid genome
Karen B. Barnard-Kubow et al.
BMC EVOLUTIONARY BIOLOGY (2014)
Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
Mao-Lun Weng et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing
Jin Zhang et al.
BMC PLANT BIOLOGY (2013)
The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms
Ji Ma et al.
GENE (2013)
Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family
Susann Wicke et al.
PLANT CELL (2013)
Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms
Chao Shi et al.
PLOS ONE (2013)
Phylogeny, rate variation, and genome size evolution of Pelargonium (Geraniaceae)
Mao-Lun Weng et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
Transcriptomes of the Parasitic Plant Family Orobanchaceae Reveal Surprising Conservation of Chlorophyll Synthesis
Norman J. Wickett et al.
CURRENT BIOLOGY (2011)
Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus
Robert K. Jansen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage
Mary M. Guisinger et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes
Etienne Delannoy et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
CDD: a Conserved Domain Database for the functional annotation of proteins
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2011)
Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)
J. Chris Blazier et al.
PLANT MOLECULAR BIOLOGY (2011)
OrgConv: detection of gene conversion using consensus sequences and its application in plant mitochondrial and chloroplast homologs
Weilong Hao
BMC BIOINFORMATICS (2010)
Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae
Daniel B. Sloan et al.
BMC EVOLUTIONARY BIOLOGY (2009)
Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment
Adrian Schneider et al.
GENOME BIOLOGY AND EVOLUTION (2009)
Gene Conversion Among Paralogs Results in Moderate False Detection of Positive Selection Using Likelihood Methods
Claudio Casola et al.
JOURNAL OF MOLECULAR EVOLUTION (2009)
Whirly proteins maintain plastid genome stability in Arabidopsis
Alexandre Marechal et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions
Mary M. Guisinger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
Robert K. Jansen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
The complete chloroplast genome sequence of Pelargonium x hortorum:: Organization and evolution of the largest and most highly rearranged chloroplast genome of land plants
Timothy W. Chumley et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses
B Goffinet et al.
TAXON (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Automatic annotation of organellar genomes with DOGMA
SK Wyman et al.
BIOINFORMATICS (2004)
Complete chloroplast DNA sequence of the moss Physcomitrella patens:: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus
C Sugiura et al.
NUCLEIC ACIDS RESEARCH (2003)
Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat
AS Perry et al.
JOURNAL OF MOLECULAR EVOLUTION (2002)
Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus
RS Millen et al.
PLANT CELL (2001)