Related references
Note: Only part of the references are listed.Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi
Daniel L. Lindner et al.
ECOLOGY AND EVOLUTION (2013)
A Consistent Phylogenetic Backbone for the Fungi
Ingo Ebersberger et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples
Havard Kauserud et al.
MYCORRHIZA (2012)
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Conrad L. Schoch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets
Johan Bengtsson et al.
RESEARCH IN MICROBIOLOGY (2012)
Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets
Johan Bengtsson et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2011)
Recent developments in the taxonomic affiliation and phylogenetic positioning of fungi: impact in applied microbiology and environmental biotechnology
Kerstin Voigt et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2011)
Removing Noise From Pyrosequenced Amplicons
Christopher Quince et al.
BMC BIOINFORMATICS (2011)
V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets
Martin Hartmann et al.
FEMS MICROBIOLOGY LETTERS (2011)
Molecular techniques revolutionize knowledge of basidiomycete evolution
Zhu L. Yang
FUNGAL DIVERSITY (2011)
A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation
R. Henrik Nilsson et al.
MYCOSCIENCE (2011)
The International Nucleotide Sequence Database Collaboration
Guy Cochrane et al.
NUCLEIC ACIDS RESEARCH (2011)
Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
De-Zhu Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences
David S. Hibbett et al.
Fungal Biology Reviews (2011)
Post-genomic approaches to understanding interactions between fungi and their environment
Ronald P. de Vries et al.
IMA FUNGUS (2011)
Current state and perspectives of fungal DNA barcoding and rapid identification procedures
Dominik Begerow et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2010)
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
Eva Bellemain et al.
BMC MICROBIOLOGY (2010)
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
R. Henrik Nilsson et al.
FUNGAL ECOLOGY (2010)
V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16 S/18 S) ribosomal RNA gene sequences
Martin Hartmann et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2010)
An open source chimera checker for the fungal ITS region
R. H. Nilsson et al.
MOLECULAR ECOLOGY RESOURCES (2010)
A constructive step towards selecting a DNA barcode for fungi
Ursula Eberhardt
NEW PHYTOLOGIST (2010)
Insidious effects of sequencing errors on perceived diversity in molecular surveys
Ian A. Dickie
NEW PHYTOLOGIST (2010)
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
Leho Tedersoo et al.
NEW PHYTOLOGIST (2010)
The ITS2 Database III-sequences and structures for phylogeny
Christian Koetschan et al.
NUCLEIC ACIDS RESEARCH (2010)
The Promise and Pitfalls of Sequence-Based Identification of Plant-Pathogenic Fungi and Oomycetes
Seogchan Kang et al.
PHYTOPATHOLOGY (2010)
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
Rolf Henrik Nilsson et al.
FEMS MICROBIOLOGY LETTERS (2009)
5.8S-28S rRNA interaction and HMM-based ITS2 annotation
Alexander Keller et al.
GENE (2009)
Progress towards DNA barcoding of fungi
Keith A. Seifert
MOLECULAR ECOLOGY RESOURCES (2009)
Fungal ecology catches fire
David S. Hibbett et al.
NEW PHYTOLOGIST (2009)
Fungal Community Ecology: A Hybrid Beast with a Molecular Master
Kabir G. Peay et al.
BIOSCIENCE (2008)
Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas
D. Lee Taylor et al.
NEW PHYTOLOGIST (2008)
Better the devil you know?: Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants
Gonzalo Nieto Feliner et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)
Reconstructing the early evolution of Fungi using a six-gene phylogeny
Timothy Y. James et al.
NATURE (2006)
The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, Fungi
A Tehler et al.
MYCOLOGICAL RESEARCH (2003)
The magnitude of fungal diversity: the 1.5 million species estimate revisited
DL Hawksworth
MYCOLOGICAL RESEARCH (2001)
The molecular revolution in ectomycorrhizal ecology: peeking into the black-box
TR Horton et al.
MOLECULAR ECOLOGY (2001)