4.6 Article

SOAPBarcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly

Binghang Liu et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

Donald J. Baird et al.

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

Tracking earthworm communities from soil DNA

Friederike Bienert et al.

MOLECULAR ECOLOGY (2012)

Review Biochemistry & Molecular Biology

Next-generation sequencing technologies for environmental DNA research

Shadi Shokralla et al.

MOLECULAR ECOLOGY (2012)

Review Biochemistry & Molecular Biology

Bioinformatic challenges for DNA metabarcoding of plants and animals

Eric Coissac et al.

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

DNA from soil mirrors plant taxonomic and growth form diversity

N. G. Yoccoz et al.

MOLECULAR ECOLOGY (2012)

Editorial Material Biochemistry & Molecular Biology

Environmental DNA

Pierre Taberlet et al.

MOLECULAR ECOLOGY (2012)

Article Multidisciplinary Sciences

Prey Preference of Snow Leopard (Panthera uncia) in South Gobi, Mongolia

Wasim Shehzad et al.

PLOS ONE (2012)

Review Ecology

Sequencing our way towards understanding global eukaryotic biodiversity

Holly M. Bik et al.

TRENDS IN ECOLOGY & EVOLUTION (2012)

Article Ecology

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

Douglas W. Yu et al.

METHODS IN ECOLOGY AND EVOLUTION (2012)

Article Biochemical Research Methods

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

Xiaolin Hao et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

UCHIME improves sensitivity and speed of chimera detection

Robert C. Edgar et al.

BIOINFORMATICS (2011)

Editorial Material Ecology

UniFrac: an effective distance metric for microbial community comparison

Catherine Lozupone et al.

ISME JOURNAL (2011)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

S. Creer et al.

MOLECULAR ECOLOGY (2010)

Article Biochemistry & Molecular Biology

Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics

M. J. T. N. Timmermans et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

SOAP: short oligonucleotide alignment program

Ruiqiang Li et al.

BIOINFORMATICS (2008)

Article Evolutionary Biology

Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics

Kasper Munch et al.

SYSTEMATIC BIOLOGY (2008)

Article Biochemistry & Molecular Biology

BOLD: The Barcode of Life Data System (www.barcodinglife.org)

Sujeevan Ratnasingham et al.

MOLECULAR ECOLOGY NOTES (2007)

Article Multidisciplinary Sciences

An Eulerian path approach to DNA fragment assembly

PA Pevzner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)