Journal
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
Volume -, Issue -, Pages -Publisher
OXFORD UNIV PRESS
DOI: 10.1093/database/bas047
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Funding
- National Science Foundation [DBI-0850219]
- National Institutes of Health National Human Genome Research Institute (NHGRI) [5P41HG002273-09]
- TAIR
- Direct For Biological Sciences
- Div Of Biological Infrastructure [0850219] Funding Source: National Science Foundation
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TAIR (The Arabidopsis Information Resource) is the model organism database (MOD) for Arabidopsis thaliana, a model plant with a literature corpus of about 39 000 articles in PubMed, with over 4300 new articles added in 2011. We have developed a literature curation workflow incorporating both automated and manual elements to cope with this flood of new research articles. The current workflow can be divided into two phases: article selection and curation. Structured controlled vocabularies, such as the Gene Ontology and Plant Ontology are used to capture free text information in the literature as succinct ontology-based annotations suitable for the application of computational analysis methods. We also describe our curation platform and the use of text mining tools in our workflow.
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