Related references
Note: Only part of the references are listed.A prior-based integrative framework for functional transcriptional regulatory network inference (vol 45, e21, 2016)
Alireza F. Siahpirani et al.
NUCLEIC ACIDS RESEARCH (2017)
FlyBase at 25: looking to the future
L. Sian Gramates et al.
NUCLEIC ACIDS RESEARCH (2017)
The Human Cell Atlas: from vision to reality
Orit Rozenblatt-Rosen et al.
NATURE (2017)
Enhancing gene regulatory network inference through data integration with markov random fields
Michael Banf et al.
SCIENTIFIC REPORTS (2017)
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
Socorro Gama-Castro et al.
NUCLEIC ACIDS RESEARCH (2016)
TANDEM: a two-stage approach to maximize interpretability of drug response models based on multiple molecular data types
Nanne Aben et al.
BIOINFORMATICS (2016)
Quantitatively predictable control of Drosophila transcriptional enhancers in vivo with engineered transcription factors
Justin Crocker et al.
NATURE GENETICS (2016)
Effects of Gene Dose, Chromatin, and Network Topology on Expression in Drosophila melanogaster
Hangnoh Lee et al.
PLOS GENETICS (2016)
Integrative random forest for gene regulatory network inference
Francesca Petralia et al.
BIOINFORMATICS (2015)
COREGNET: reconstruction and integrated analysis of co-regulatory networks
Remy Nicolle et al.
BIOINFORMATICS (2015)
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network
Mario L. Arrieta-Ortiz et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
Recruitment of Mediator Complex by Cell Type and Stage-Specific Factors Required for Tissue-Specific TAF Dependent Gene Activation in an Adult Stem Cell Lineage
Chenggang Lu et al.
PLOS GENETICS (2015)
Gene Ontology Consortium: going forward
J. A. Blake et al.
NUCLEIC ACIDS RESEARCH (2015)
Functional module identification in protein interaction networks by interaction patterns
Yijie Wang et al.
BIOINFORMATICS (2014)
Sex- and Tissue-Specific Functions of Drosophila Doublesex Transcription Factor Target Genes
Emily Clough et al.
DEVELOPMENTAL CELL (2014)
Diversity and dynamics of the Drosophila transcriptome
James B. Brown et al.
NATURE (2014)
Proximal alternating linearized minimization for nonconvex and nonsmooth problems
Jerome Bolte et al.
MATHEMATICAL PROGRAMMING (2014)
Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks
Alex Greenfield et al.
BIOINFORMATICS (2013)
Inferring gene regulatory networks by ANOVA
Robert Kueffner et al.
BIOINFORMATICS (2012)
TIGRESS: Trustful Inference of Gene REgulation using Stability Selection
Anne-Claire Haury et al.
BMC SYSTEMS BIOLOGY (2012)
Genomics of sex determination in Drosophila
Emily Clough et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2012)
Promoter contribution to the testis-specific expression of Stellate gene family in Drosophila melanogaster
Oxana M. Olenkina et al.
GENE (2012)
Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks
Daniel Marbach et al.
GENOME RESEARCH (2012)
Wisdom of crowds for robust gene network inference
Daniel Marbach et al.
NATURE METHODS (2012)
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
Christine Vogel et al.
NATURE REVIEWS GENETICS (2012)
Physical Module Networks: an integrative approach for reconstructing transcription regulation
Noa Novershtern et al.
BIOINFORMATICS (2011)
The developmental transcriptome of Drosophila melanogaster
Brenton R. Graveley et al.
NATURE (2011)
The role of the Drosophila LAMMER protein kinase DOA in somatic sex determination
Leonard Rabinow et al.
JOURNAL OF GENETICS (2010)
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
Van Anh Huynh-Thu et al.
PLOS ONE (2010)
Revealing strengths and weaknesses of methods for gene network inference
Daniel Marbach et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Analysis and Computational Dissection of Molecular Signature Multiplicity
Alexander Statnikov et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Quality of regulatory elements in Drosophila retrogenes
Yongsheng Bai et al.
GENOMICS (2009)
Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks
Antonio Reverter et al.
BIOINFORMATICS (2008)
Network inference using informative priors
Sach Mukherjee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
PATHWISE COORDINATE OPTIMIZATION
Jerome Friedman et al.
ANNALS OF APPLIED STATISTICS (2007)
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
Jeremiah J. Faith et al.
PLOS BIOLOGY (2007)
The DrosDel deletion collection: A Drosophila genomewide chromosomal deficiency resource
Edward Ryder et al.
GENETICS (2007)
Tissue-specific TAFs counteract polycomb to turn on terminal differentiation
X Chen et al.
SCIENCE (2005)
Regularization and variable selection via the elastic net
H Zou et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2005)
Testis-specific TAF homologs collaborate to control a tissue-specific transcription program
M Hiller et al.
DEVELOPMENT (2004)
A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
M Parisi et al.
GENOME BIOLOGY (2004)
Network component analysis: Reconstruction of regulatory signals in biological systems
JC Liao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Laplacian eigenmaps for dimensionality reduction and data representation
M Belkin et al.
NEURAL COMPUTATION (2003)
Paucity of genes on the Drosophila X chromosome showing male-biased expression
M Parisi et al.
SCIENCE (2003)
Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis
J Andrews et al.
GENOME RESEARCH (2000)
The initiator element of the Drosophila β2 tubulin gene core promoter contributes to gene expression in vivo but is not required for male germ-cell specific expression
A Santel et al.
NUCLEIC ACIDS RESEARCH (2000)