4.8 Article

The tobacco genome sequence and its comparison with those of tomato and potato

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

The Norway spruce genome sequence and conifer genome evolution

Bjorn Nystedt et al.

NATURE (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis

Nicolas Sierro et al.

GENOME BIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective

Aureliano Bombarely et al.

BMC GENOMICS (2012)

Article Biochemistry & Molecular Biology

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

Aureliano Bombarely et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2012)

Article Multidisciplinary Sciences

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato et al.

NATURE (2012)

Article Multidisciplinary Sciences

Analysis of the breadwheat genome using whole-genome shotgun sequencing

Rachel Brenchley et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

Rajeev K. Varshney et al.

NATURE BIOTECHNOLOGY (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Yupeng Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Adaptive seeds tame genomic sequence comparison

Szymon M. Kielbasa et al.

GENOME RESEARCH (2011)

Article Biochemical Research Methods

Dynamic Metabonomic Responses of Tobacco (Nicotiana tabacum) Plants to Salt Stress

Jingtao Zhang et al.

JOURNAL OF PROTEOME RESEARCH (2011)

Article Multidisciplinary Sciences

Genome sequence and analysis of the tuber crop potato

Xun Xu et al.

NATURE (2011)

Article Biotechnology & Applied Microbiology

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing

Ian Bancroft et al.

NATURE BIOTECHNOLOGY (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemistry & Molecular Biology

A new repeat-masking method enables specific detection of homologous sequences

Martin C. Frith

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

Parameters for accurate genome alignment

Martin C. Frith et al.

BMC BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li et al.

GENOME RESEARCH (2010)

Article Biotechnology & Applied Microbiology

Differential expression analysis for sequence count data

Simon Anders et al.

GENOME BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Putrescine N-methyltransferase - The start for alkaloids

Stefan Biastoff et al.

PHYTOCHEMISTRY (2009)

Article Plant Sciences

First nuclear DNA amounts in more than 300 angiosperms

BJM Zonneveld et al.

ANNALS OF BOTANY (2005)

Article Biochemical Research Methods

De novo identification of repeat families in large genomes

AL Price et al.

BIOINFORMATICS (2005)

Article Biochemical Research Methods

Automated generation of heuristics for biological sequence comparison

GS Slater et al.

BMC BIOINFORMATICS (2005)

Review Plant Sciences

Plant molecular farming: systems and products

ME Horn et al.

PLANT CELL REPORTS (2004)

Article Biochemical Research Methods

Gene finding in novel genomes

I Korf

BMC BIOINFORMATICS (2004)

Article Biotechnology & Applied Microbiology

Versatile and open software for comparing large genomes

S Kurtz et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)

Article Biochemical Research Methods

InterProScan - an integration platform for the signature-recognition methods in InterPro

EM Zdobnov et al.

BIOINFORMATICS (2001)