Related references
Note: Only part of the references are listed.The Iron Stimulon and Fur Regulon of Geobacter sulfurreducens and Their Role in Energy Metabolism
Mallory Embree et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
Byung-Kwan Cho et al.
BMC BIOLOGY (2014)
Global transcriptional response of Caulobacter crescentus to iron availability
Jose F. da Silva Neto et al.
BMC GENOMICS (2013)
Identification and Characterization of Novel Helicobacter pylori apo-Fur-Regulated Target Genes
Beth M. Carpenter et al.
JOURNAL OF BACTERIOLOGY (2013)
Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction
Edward J. O'Brien et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli
Douglas McCloskey et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
Heladia Salgado et al.
NUCLEIC ACIDS RESEARCH (2013)
The Transcriptional Landscape of Campylobacter jejuni under Iron Replete and Iron Limited Growth Conditions
James Butcher et al.
PLOS ONE (2013)
Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution
Boris R. Belitsky et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The Bacterial Response Regulator ArcA Uses a Diverse Binding Site Architecture to Regulate Carbon Oxidation Globally
Dan M. Park et al.
PLOS GENETICS (2013)
Genome-scale Analysis of Escherichia coli FNR Reveals Complex Features of Transcription Factor Binding
Kevin S. Myers et al.
PLOS GENETICS (2013)
Fur-Mediated Activation of Gene Transcription in the Human Pathogen Neisseria gonorrhoeae
Chunxiao Yu et al.
JOURNAL OF BACTERIOLOGY (2012)
Expression of Multidrug Resistance Efflux Pump Gene norA Is Iron Responsive in Staphylococcus aureus
Xin Deng et al.
JOURNAL OF BACTERIOLOGY (2012)
Inferring direct DNA binding from ChIP-seq
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2012)
Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation
James Butcher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The small RNA RybA regulates key-genes in the biosynthesis of aromatic amino acids under peroxide stress in E. coli
Kirstin Gerstle et al.
RNA BIOLOGY (2012)
Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling
Donghyuk Kim et al.
PLOS GENETICS (2012)
Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
Ho Sung Rhee et al.
CELL (2011)
The alternative aerobic ribonucleotide reductase of Escherichia coli, NrdEF, is a manganese-dependent enzyme that enables cell replication during periods of iron starvation
Julia E. Martin et al.
MOLECULAR MICROBIOLOGY (2011)
EcoCyc: a comprehensive database of Escherichia coli biology
Ingrid M. Keseler et al.
NUCLEIC ACIDS RESEARCH (2011)
Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation
Bryan W. Davies et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Staphylococcus aureus Fur Regulates the Expression of Virulence Factors That Contribute to the Pathogenesis of Pneumonia
Victor J. Torres et al.
INFECTION AND IMMUNITY (2010)
Helicobacter pylori apo-Fur regulation appears unconserved across species
Shana Miles et al.
JOURNAL OF MICROBIOLOGY (2010)
Induction of the ferritin gene (ftnA) of Escherichia coli by Fe2+-Fur is mediated by reversal of H-NS silencing and is RyhB independent
Anjali Nandal et al.
MOLECULAR MICROBIOLOGY (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Comprehensive comparative analysis of strand-specific RNA sequencing methods
Joshua Z. Levin et al.
NATURE METHODS (2010)
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
Guillaume Desnoyers et al.
EMBO JOURNAL (2009)
This Is Not Your Mother's Repressor: the Complex Role of Fur in Pathogenesis
Beth M. Carpenter et al.
INFECTION AND IMMUNITY (2009)
IscR Controls Iron-Dependent Biofilm Formation in Escherichia coli by Regulating Type I Fimbria Expression
Yun Wu et al.
JOURNAL OF BACTERIOLOGY (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts
Byung-Kwan Cho et al.
GENOME RESEARCH (2008)
Oxidant-Responsive Induction of the suf Operon, Encoding a Fe-S Assembly System, through Fur and IscR in Escherichia coli
Kyung-Chang Lee et al.
JOURNAL OF BACTERIOLOGY (2008)
The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions
Tomohiro Shimada et al.
NUCLEIC ACIDS RESEARCH (2008)
Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli
Byung-Kwan Cho et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Combinatorics of feedback in cellular uptake and metabolism of small molecules
Sandeep Krishna et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Structure and function of the Escherichia coli protein YmgB:: A protein critical for biofilm formation and acid-resistance
Jintae Lee et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
EfeUOB (YcdNOB) is a tripartite, acid-induced and CpxAR-regulated, low-pH Fe2+ transporter that is cryptic in Escherichia coli K-12 but functional in E-coli O157:H7
Jieni Cao et al.
MOLECULAR MICROBIOLOGY (2007)
Genetic regulation of fluxes:: iron homeostasis of Escherichia coli
Szabolcs Semsey et al.
NUCLEIC ACIDS RESEARCH (2006)
A set of recombineering plasmids for gram-negative bacteria
Simanti Datta et al.
GENE (2006)
Staphylococcus aureus redirects central metabolism to increase iron availability
David B. Friedman et al.
PLOS PATHOGENS (2006)
PCR-based tandem epitope tagging system for Escherichia coli genome engineering
BK Cho et al.
BIOTECHNIQUES (2006)
Fur functions as an activator and as a repressor of putative virulence genes in Neisseria meningitidis
I Delany et al.
MOLECULAR MICROBIOLOGY (2004)
Global iron-dependent gene regulation in Escherichia coli -: A new mechanism for iron homeostasis
JP McHugh et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Recognition of DNA by Fur: a reinterpretation of the Fur box consensus sequence
N Baichoo et al.
JOURNAL OF BACTERIOLOGY (2002)
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
E Massé et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)