4.8 Article

Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Sipros/ProRata: a versatile informatics system for quantitative community proteomics

Yingfeng Wang et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Global Dynamics of the Escherichia coli Proteome and Phosphoproteome During Growth in Minimal Medium

Nelson C. Soares et al.

JOURNAL OF PROTEOME RESEARCH (2013)

Article Biochemical Research Methods

Comprehensive Profiling of Protein Lysine Acetylation in Escherichia coli

Kai Zhang et al.

JOURNAL OF PROTEOME RESEARCH (2013)

Article Biotechnology & Applied Microbiology

A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics

Harald Marx et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

Integrated proteomic analysis of post-translational modifications by serial enrichment

Philipp Mertins et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

Danielle L. Swaney et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

Systematic Functional Prioritization of Protein Posttranslational Modifications

Pedro Beltrao et al.

Article Biochemistry & Molecular Biology

Comprehensive Mass Spectrometric Mapping of the Hydroxylated Amino Acid residues of the α1(V) Collagen Chain

Chenxi Yang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Biochemical Research Methods

Coupling a Detergent Lysis/Cleanup Methodology with Intact Protein Fractionation for Enhanced Proteome Characterization

Ritin Sharma et al.

JOURNAL OF PROTEOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium

Vera van Noort et al.

MOLECULAR SYSTEMS BIOLOGY (2012)

Review Biochemical Research Methods

The methylproteome and the intracellular methylation network

Melissa A. Erce et al.

PROTEOMICS (2012)

Review Biochemical Research Methods

In vivo relevance of citrullinated proteins and the challenges in their detection

Marlies De Ceuleneer et al.

PROTEOMICS (2012)

Article Multidisciplinary Sciences

Endogenous Protein S-Nitrosylation in E. coli: Regulation by OxyR

Divya Seth et al.

SCIENCE (2012)

Article Biochemical Research Methods

A Proteomic and Transcriptomic Approach Reveals New Insight into β-methylthiolation of Escherichia coli Ribosomal Protein S12

Michael Brad Strader et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Article Biochemical Research Methods

Confident Phosphorylation Site Localization Using the Mascot Delta Score

Mikhail M. Savitski et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Article Biochemical Research Methods

A large-scale method to measure absolute protein phosphorylation stoichiometries

Ronghu Wu et al.

NATURE METHODS (2011)

Article Biochemistry & Molecular Biology

Proteome-Wide Mapping of the Drosophila Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation

Brian T. Weinert et al.

SCIENCE SIGNALING (2011)

Article Biochemistry & Molecular Biology

Ecological distribution and population physiology defined by proteomics in a natural microbial community

Ryan S. Mueller et al.

MOLECULAR SYSTEMS BIOLOGY (2010)

Article Multidisciplinary Sciences

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities

Vincent J. Denef et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

MUFOLD: A new solution for protein 3D structure prediction

Jingfen Zhang et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis

Jesper V. Olsen et al.

SCIENCE SIGNALING (2010)

Review Genetics & Heredity

Moving from transcriptional to phospho-evolution: generalizing regulatory evolution?

Alan M. Moses et al.

TRENDS IN GENETICS (2010)

Review Biotechnology & Applied Microbiology

Protein promiscuity and its implications for biotechnology

Irene Nobeli et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

Universal sample preparation method for proteome analysis

Jacek R. Wisniewski et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation

Itay Tirosh et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions

Chunaram Choudhary et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species

Pedro Beltrao et al.

PLOS BIOLOGY (2009)

Article Multidisciplinary Sciences

Virus population dynamics and acquired virus resistance in natural microbial communities

Anders F. Andersson et al.

SCIENCE (2008)

Review Multidisciplinary Sciences

The microbial engines that drive Earth's biogeochemical cycles

Paul G. Falkowski et al.

SCIENCE (2008)

Article Biochemical Research Methods

Higher-energy C-trap dissociation for peptide modification analysis

Jesper V. Olsen et al.

NATURE METHODS (2007)

Article Biochemistry & Molecular Biology

Systematic discovery of in vivo phosphorylation networks

Rune Linding et al.

Article Multidisciplinary Sciences

CRISPR provides acquired resistance against viruses in prokaryotes

Rodolphe Barrangou et al.

SCIENCE (2007)

Article Multidisciplinary Sciences

Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors

Roger P. Alexander et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Biochemical Research Methods

Interpretation of shotgun proteomic data - The protein inference problem

AI Nesvizhskii et al.

MOLECULAR & CELLULAR PROTEOMICS (2005)

Article Multidisciplinary Sciences

Community proteomics of a natural microbial biofilm

RJ Ram et al.

SCIENCE (2005)

Article Biochemistry & Molecular Biology

Prediction of solvent accessibility and sites of deleterious mutations from protein sequence

HL Chen et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Chemistry, Multidisciplinary

Protein posttranslational modifications: The chemistry of proteome diversifications

CT Walsh et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2005)

Article Multidisciplinary Sciences

Nitric oxide, oxidants, and protein tyrosine nitration

R Radi

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Cell Biology

Making sense of it all: Bacterial chemotaxis

GH Wadhams et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)

Review Microbiology

Microbial communities in acid mine drainage

BJ Baker et al.

FEMS MICROBIOLOGY ECOLOGY (2003)

Article Biotechnology & Applied Microbiology

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

MP Washburn et al.

NATURE BIOTECHNOLOGY (2001)