Related references
Note: Only part of the references are listed.Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
Hideya Kawaji et al.
GENOME RESEARCH (2014)
An atlas of active enhancers across human cell types and tissues
Robin Andersson et al.
NATURE (2014)
A promoter-level mammalian expression atlas
Alistair R. R. Forrest et al.
NATURE (2014)
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
Jessica Severin et al.
NATURE BIOTECHNOLOGY (2014)
Preserving sequence annotations across reference sequences
Zuotian Tatum et al.
JOURNAL OF BIOMEDICAL SEMANTICS (2014)
H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery
Jun-ichi Takeda et al.
NUCLEIC ACIDS RESEARCH (2013)
The UCSC Genome Browser database: extensions and updates 2013
Laurence R. Meyer et al.
NUCLEIC ACIDS RESEARCH (2013)
ArrayExpress update-trends in database growth and links to data analysis tools
Gabriella Rustici et al.
NUCLEIC ACIDS RESEARCH (2013)
Database resources of the National Center for Biotechnology Information
Abigail Acland et al.
NUCLEIC ACIDS RESEARCH (2013)
Ensembl 2013
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2013)
Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain
George P. Patrinos et al.
HUMAN MUTATION (2012)
Landscape of transcription in human cells
Sarah Djebali et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Toward interoperable bioscience data
Susanna-Assunta Sansone et al.
NATURE GENETICS (2012)
5′ end-centered expression profiling using cap-analysis gene expression and next-generation sequencing
Hazuki Takahashi et al.
NATURE PROTOCOLS (2012)
DBTSS: DataBase of Transcriptional Start Sites progress report in 2012
Riu Yamashita et al.
NUCLEIC ACIDS RESEARCH (2012)
Reconstruction of Monocyte Transcriptional Regulatory Network Accompanies Monocytic Functions in Human Fibroblasts
Takahiro Suzuki et al.
PLOS ONE (2012)
Automated Workflow for Preparation of cDNA for Cap Analysis of Gene Expression on a Single Molecule Sequencer
Masayoshi Itoh et al.
PLOS ONE (2012)
Uberon, an integrative multi-species anatomy ontology
Christopher J. Mungall et al.
GENOME BIOLOGY (2012)
Unamplified cap analysis of gene expression on a single-molecule sequencer
Mutsumi Kanamori-Katayama et al.
GENOME RESEARCH (2011)
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
Patricia L. Whetzel et al.
NUCLEIC ACIDS RESEARCH (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
The NIH Roadmap Epigenomics Mapping Consortium
Bradley E. Bernstein et al.
NATURE BIOTECHNOLOGY (2010)
Gene Expression Atlas at the European Bioinformatics Institute
Misha Kapushesky et al.
NUCLEIC ACIDS RESEARCH (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
TagDust-a program to eliminate artifacts from next generation sequencing data
Timo Lassmann et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
SDRF2GRAPH-a visualization tool of a spreadsheet-based description of experimental processes
Hideya Kawaji et al.
BMC BIOINFORMATICS (2009)
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Harukazu Suzuki et al.
NATURE GENETICS (2009)
BodyParts3D: 3D structure database for anatomical concepts
Nobutaka Mitsuhashi et al.
NUCLEIC ACIDS RESEARCH (2009)
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
Hideya Kawaji et al.
GENOME BIOLOGY (2009)
BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources
Chunlei Wu et al.
GENOME BIOLOGY (2009)
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
Jan Christian Bryne et al.
NUCLEIC ACIDS RESEARCH (2008)
CellMontage: similar expression profile search server
Wataru Fujibuchi et al.
BIOINFORMATICS (2007)
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
Barry Smith et al.
NATURE BIOTECHNOLOGY (2007)
Construction, visualisation, and clustering of transcription networks from Microarray expression data
Tom C. Freeman et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Simplified ontologies allowing comparison of developmental mammalian gene expression
Adele Kruger et al.
GENOME BIOLOGY (2007)
Genome-wide analysis of mammalian promoter architecture and evolution
Piero Carninci et al.
NATURE GENETICS (2006)
CAGE basic/analysis databases: the CAGE resource for comprehensive promoter analysis
Hideya Kawaji et al.
NUCLEIC ACIDS RESEARCH (2006)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
A gene atlas of the mouse and human protein-encoding transcriptomes
AI Su et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis
T Kasukawa et al.
GENOMICS (2004)
GOstat: find statistically overrepresented Gene Ontologies within a group of genes
T Beissbarth et al.
BIOINFORMATICS (2004)
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
T Shiraki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
CIBEX: Center for information biology gene EXpression database
K Ikeo et al.
COMPTES RENDUS BIOLOGIES (2003)
DigiNorthern, digital expression analysis of query genes based on ESTs
JX Wang et al.
BIOINFORMATICS (2003)
A reference ontology for biomedical informatics: the Foundational Model of Anatomy
C Rosse et al.
JOURNAL OF BIOMEDICAL INFORMATICS (2003)
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Y Okazaki et al.
NATURE (2002)
Fundamentals of experimental design for cDNA microarrays
GA Churchill
NATURE GENETICS (2002)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
R Edgar et al.
NUCLEIC ACIDS RESEARCH (2002)
The HUGO Gene Nomenclature Committee (HGNC)
S Povey et al.
HUMAN GENETICS (2001)
Isolation of novel heart-specific genes using the BodyMap database
H Soejima et al.
GENOMICS (2001)
Functional annotation of a full-length mouse cDNA collection
J Kawai et al.
NATURE (2001)
Share Paper
