4.4 Article

Gateways to the FANTOM5 promoter level mammalian expression atlas

Journal

GENOME BIOLOGY
Volume 16, Issue -, Pages -

Publisher

BMC
DOI: 10.1186/s13059-014-0560-6

Keywords

-

Funding

  1. Research Grant for RIKEN Omics Science Center from MEXT
  2. Grant of the Innovative Cell Biology by Innovative Technology (Cell Innovation Program) from the MEXT, Japan
  3. Research Grant from MEXT
  4. Research Grant to RIKEN Preventive Medicine and Diagnosis Innovation Program from MEXT
  5. John Templeton Foundation
  6. EU's Innovative Medicine Joint Undertaking under (Open PHACTS) [115191]
  7. Novo Nordisk Foundation
  8. Lundbeck Foundation
  9. European Union Seventh Framework Programme (FP7) [305444]
  10. Center for Medical Systems Biology within the framework of The Netherlands Genomics Initiative (NGI)/Netherlands Organisation for Scientific Research (NWO) [BB/JO1446X/1, BB/I001107/1]
  11. Director, Office of Science, Office of Basic Energy Sciences, of the US Department of Energy [DE-AC02-05CH11231]
  12. Biotechnology and Biological Sciences Research Council [BBS/E/D/20241866, BBS/E/D/20241863, BBS/E/D/20241864, BB/I001107/1] Funding Source: researchfish
  13. Lundbeck Foundation [R82-2010-6779] Funding Source: researchfish
  14. Novo Nordisk Fonden [NNF10SA1016550] Funding Source: researchfish
  15. Wellcome Trust [103258/Z/13/Z] Funding Source: researchfish
  16. BBSRC [BBS/E/D/20241864, BBS/E/D/20241863, BBS/E/D/20241866, BB/I001107/1] Funding Source: UKRI
  17. Wellcome Trust [103258/Z/13/Z] Funding Source: Wellcome Trust

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The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.

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