Related references
Note: Only part of the references are listed.Sulfur Species as Redox Partners and Electron Shuttles for Ferrihydrite Reduction by Sulfurospirillum deleyianum
Regina Lohmayer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
The complete genome sequence for putative H2- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome
Kim M. Handley et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake
T. L. Hamilton et al.
GEOBIOLOGY (2014)
Deep-sea hydrothermal vent Epsilonproteobacteria encode a conserved and widespread nitrate reduction pathway (Nap)
Costantino Vetriani et al.
ISME JOURNAL (2014)
Evidence for Niche Partitioning Revealed by the Distribution of Sulfur Oxidation Genes Collected from Areas of a Terrestrial Sulfidic Spring with Differing Geochemical Conditions
Brendan Headd et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations
Joerg Simon et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2013)
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
Kim M. Handley et al.
ISME JOURNAL (2013)
A Phylum-Level Bacterial Phylogenetic Marker Database
Zhang Wang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Contrasting Patterns of Community Assembly in the Stratified Water Column of Great Salt Lake, Utah
Jonathan E. Meuser et al.
MICROBIAL ECOLOGY (2013)
Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids
Nancy H. Akerman et al.
FRONTIERS IN MICROBIOLOGY (2013)
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling
Laura A. Hug et al.
MICROBIOME (2013)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
Drivers of epsilonproteobacterial community composition in sulfidic caves and springs
Karen Rossmassler et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
Cyanobacterial life at low O2: community genomics and function reveal metabolic versatility and extremely low diversity in a Great Lakes sinkhole mat
A. A. Voorhies et al.
GEOBIOLOGY (2012)
Phorcysia thermohydrogeniphila gen. nov., sp nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium from a deep-sea hydrothermal vent
Ileana Perez-Rodriguez et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)
The Sulfur Oxygenase Reductase from the Mesophilic Bacterium Halothiobacillus neapolitanus Is a Highly Active Thermozyme
Andreas Veith et al.
JOURNAL OF BACTERIOLOGY (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones
Jana Grote et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T))
Cliff Han et al.
STANDARDS IN GENOMIC SCIENCES (2012)
The cytochrome bd respiratory oxygen reductases
Vitaliy B. Borisov et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2011)
ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
Complete Genome Sequences of Arcobacter butzleri ED-1 and Arcobacter sp Strain L, Both Isolated from a Microbial Fuel Cell
Hidehiro Toh et al.
JOURNAL OF BACTERIOLOGY (2011)
Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries
Liang F. Dong et al.
LIMNOLOGY AND OCEANOGRAPHY (2011)
Sulfur globule oxidation in green sulfur bacteria is dependent on the dissimilatory sulfite reductase system
Carina Holkenbrink et al.
MICROBIOLOGY-SGM (2011)
Pathways of Carbon and Energy Metabolism of the Epibiotic Community Associated with the Deep-Sea Hydrothermal Vent Shrimp Rimicaris exoculata
Michael Huegler et al.
PLOS ONE (2011)
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria
Lea H. Gregersen et al.
FRONTIERS IN MICROBIOLOGY (2011)
Sulfur metabolisms in epsilon- and gamma-Proteobacteria in deep-sea hydrothermal fields
Masahiro Yamamoto et al.
FRONTIERS IN MICROBIOLOGY (2011)
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
Christopher S. Miller et al.
GENOME BIOLOGY (2011)
Community Structure of Subsurface Biofilms in the Thermal Sulfidic Caves of Acquasanta Terme, Italy
D. S. Jones et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Fast and accurate long-read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2010)
Biochemical Characterization of Individual Components of the Allochromatium vinosum DsrMKJOP Transmembrane Complex Aids Understanding of Complex Function In Vivo
Fabian Grein et al.
JOURNAL OF BACTERIOLOGY (2010)
How Escherichia coli Is Equipped to Oxidize Hydrogen under Different Redox Conditions
Michael J. Lukey et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
THE SULFIDIC THERMAL CAVES OF ACQUASANTA TERME (CENTRAL ITALY)
Sandro Galdenzi et al.
JOURNAL OF CAVE AND KARST STUDIES (2010)
The integrated microbial genomes system: an expanding comparative analysis resource
Victor M. Markowitz et al.
NUCLEIC ACIDS RESEARCH (2010)
A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast
Don E. Canfield et al.
SCIENCE (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria
Melanie Kern et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2009)
Detoxification of sulphidic African shelf waters by blooming chemolithotrophs
Gaute Lavik et al.
NATURE (2009)
Functioning of intertidal flats inferred from temporal and spatial dynamics of O2, H2S and pH in their surface sediment
Stefan Jansen et al.
OCEAN DYNAMICS (2009)
Community-wide analysis of microbial genome sequence signatures
Gregory J. Dick et al.
GENOME BIOLOGY (2009)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Niche differentiation among sulfur-oxidizing bacterial populations in cave waters
Jennifer L. Macalady et al.
ISME JOURNAL (2008)
Structural and Molecular Genetic Insight into a Widespread Sulfur Oxidation Pathway
Christians Dahl et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
A genomic region required for phototrophic thiosulfate oxidation in the green sulfur bacterium Chlorobium tepidum (syn. Chlorobaculum tepidum)
Leong-Keat Chan et al.
MICROBIOLOGY-SGM (2008)
Molecular analysis of the diversity of the sulfide: quinone reductase (sqr) gene in sediment environments
Vinh Hoa Pham et al.
MICROBIOLOGY-SGM (2008)
Exploring the Submarine Ring of Fire Mariana Arc - Western Pacific
Robert W. Embley et al.
OCEANOGRAPHY (2007)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
Deep-sea vent ε-proteobacterial genomes provide insights into emergence of pathogens
Satoshi Nakagawa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Extremely acidic, pendulous cave wall biofilms from the Frasassi cave system, Italy
Jennifer L. Macalady et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Growth and mechanism of filamentous-sulfur formation by Candidatus Arcobacter sulfidicus in opposing oxygen-sulfide gradients
Stefan M. Sievert et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Sulfide oxidation under chemolithoautotrophic denitrifying conditions
Ricardo Beristain Cardoso et al.
BIOTECHNOLOGY AND BIOENGINEERING (2006)
Dominant microbial Populations in limestone-corroding stream biofilms, Frasassi cave system, Italy
Jennifer L. Macalady et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
Maria Anisimova et al.
SYSTEMATIC BIOLOGY (2006)
The versatile epsilon-proteobacteria: key players in sulphidic habitats
Barbara J. Campbell et al.
NATURE REVIEWS MICROBIOLOGY (2006)
Impact of bacterial NO3- transport on sediment biogeochemistry
M Sayama et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field
S Nakagawa et al.
ENVIRONMENTAL MICROBIOLOGY (2005)
Nitratiruptor tergarcus gen. nov., sp nov and Nitratifractor salsuginis gen. nov., sp nov., nitrate-reducing chemolithoautotrophs of the ε-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough
S Nakagawa et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)
The bacterial cytochrome cbb3 oxidases
RS Pitcher et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2004)
ARB:: a software environment for sequence data
W Ludwig et al.
NUCLEIC ACIDS RESEARCH (2004)
Denitrification and anammox activity in Arctic marine sediments
S Rysgaard et al.
LIMNOLOGY AND OCEANOGRAPHY (2004)
Sulfurovum lithotrophicum gen. nov., sp nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
F Inagaki et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic Epsilonproteobacteria
AS Engel et al.
FEMS MICROBIOLOGY ECOLOGY (2004)
The evolution of the Earth surface sulfur reservoir
DE Canfield
AMERICAN JOURNAL OF SCIENCE (2004)
Thermovibrio ammonificans sp nov., a thermophilic, chemolithotrophic, nitrate-ammonifying bacterium from deep-sea hydrothermal vents
C Vetriani et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Sulfuricurvum kujiense gen. nov., sp nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity
Y Kodama et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
S Guindon et al.
SYSTEMATIC BIOLOGY (2003)
Supraglacial sulfur springs and associated biological activity in the Canadian high arctic - Signs of life beneath the ice
SE Grasby et al.
ASTROBIOLOGY (2003)
Electron transport to periplasmic nitrate reductase (NapA) of Wolinella succinogenes is independent of a NapC protein
J Simon et al.
MOLECULAR MICROBIOLOGY (2003)
Sulfurimonas autotrophica gen. nov., sp nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough
F Inagaki et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)
Isolation and characterization of a sulfur-oxidizing chemolithotroph growing on crude oil under anaerobic conditions
Y Kodama et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Factors controlling anaerobic ammonium oxidation with nitrite in marine sediments
T Dalsgaard et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp that produces filamentous sulfur
CO Wirsen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Oxidation of reduced inorganic sulfur compounds by bacteria: Emergence of a common mechanism?
CG Friedrich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17
CG Friedrich et al.
JOURNAL OF BACTERIOLOGY (2000)
Isolation and characterization of strains CVO and FWKOB, two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine
D Gevertz et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
Share Paper
