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A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants

Journal

TRENDS IN PLANT SCIENCE
Volume 19, Issue 1, Pages 5-9

Publisher

ELSEVIER SCIENCE LONDON
DOI: 10.1016/j.tplants.2013.08.008

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Funding

  1. Institut National de la Recherche Agronomique (CJS PhD Fellowship)
  2. Institut National de la Recherche Agronomique (Projet Departement BAP) [BAP2013-33-NITSE]
  3. Agence Nationale de la Recherche [ANR-11-JSV6-002-01-NUTSE]
  4. Agropolis Fondation (RHIZOPOLIS grant) [07024]
  5. Region Languedoc-Roussillon (Chercheur d'Avenir)
  6. NSF [IOS-0922738]
  7. Division Of Integrative Organismal Systems [0922738] Funding Source: National Science Foundation
  8. Natural Environment Research Council [ceh010010] Funding Source: researchfish

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Members of the plant NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER (NRT1/PTR) family display protein sequence homology with the SLC15/PepT/PTR/POT family of peptide transporters in animals. In comparison to their animal and bacterial counterparts, these plant proteins transport a wide variety of substrates: nitrate, peptides, amino acids, dicarboxylates, glucosinolates, IAA, and ABA. The phylogenetic relationship of the members of the NRT1/PTR family in 31 fully sequenced plant genomes allowed the identification of unambiguous clades, defining eight subfamilies. The phylogenetic tree was used to determine a unified nomenclature of this family named NPF, for NRT1/PTR FAMILY. We propose that the members should be named accordingly: NPFX.Y, where X denotes the subfamily and Y the individual member within the species.

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