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Approximate Bayesian Computation (ABC) in practice

Journal

TRENDS IN ECOLOGY & EVOLUTION
Volume 25, Issue 7, Pages 410-418

Publisher

ELSEVIER SCIENCE LONDON
DOI: 10.1016/j.tree.2010.04.001

Keywords

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Funding

  1. Universite Joseph Fourier (ABC MSTIC)
  2. Agence Nationale de la Recherche [BLAN06-3146282 MAEV]
  3. Complex Systems Institute (IXXI)
  4. EcoChange Project

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Understanding the forces that influence natural variation within and among populations has been a major objective of evolutionary biologists for decades. Motivated by the growth in computational power and data complexity, modern approaches to this question make intensive use of simulation methods. Approximate Bayesian Computation (ABC) is one of these methods. Here we review the foundations of ABC, its recent algorithmic developments, and its applications in evolutionary biology and ecology. We argue that the use of ABC should incorporate all aspects of Bayesian data analysis: formulation, fitting, and improvement of a model. ABC can be a powerful tool to make inferences with complex models if these principles are carefully applied.

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