Related references
Note: Only part of the references are listed.Biochemical and Structural Studies of NADH-Dependent FabG Used To Increase the Bacterial Production of Fatty Acids under Anaerobic Conditions
Pouya Javidpour et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Central Metabolic Responses to the Overproduction of Fatty Acids in Escherichia coli Based on 13C-Metabolic Flux Analysis
Lian He et al.
BIOTECHNOLOGY AND BIOENGINEERING (2014)
Reliable Metabolic Flux Estimation in Escherichia coli Central Carbon Metabolism Using Intracellular Free Amino Acids
Nobuyuki Okahashi et al.
METABOLITES (2014)
Profiling metabolic networks to study cancer metabolism
Karsten Hiller et al.
CURRENT OPINION IN BIOTECHNOLOGY (2013)
From the first drop to the first truckload: commercialization of microbial processes for renewable chemicals
Stephen Van Dien
CURRENT OPINION IN BIOTECHNOLOGY (2013)
Towards dynamic metabolic flux analysis in CHO cell cultures
Woo Suk Ahn et al.
BIOTECHNOLOGY JOURNAL (2012)
Expanding the concepts and tools of metabolic engineering to elucidate cancer metabolism
Mark A. Keibler et al.
BIOTECHNOLOGY PROGRESS (2012)
A Whole-Cell Computational Model Predicts Phenotype from Genotype
Jonathan R. Karr et al.
CELL (2012)
AMPK regulates NADPH homeostasis to promote tumour cell survival during energy stress
Sang-Min Jeon et al.
NATURE (2012)
Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using 13C metabolic flux analysis
Yuki Usui et al.
MICROBIAL CELL FACTORIES (2012)
Extensive exometabolome analysis reveals extended overflow metabolism in various microorganisms
Nicole Paczia et al.
MICROBIAL CELL FACTORIES (2012)
Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage
Ines Thiele et al.
PLOS ONE (2012)
Multidimensional Optimality of Microbial Metabolism
Robert Schuetz et al.
SCIENCE (2012)
Integrating Cellular Metabolism into a Multiscale Whole-Body Model
Markus Krauss et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Driving Forces Enable High-Titer Anaerobic 1-Butanol Synthesis in Escherichia coli
Claire R. Shen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Construction of an E. Coli Genome-Scale Atom Mapping Model for MFA Calculations
Prabhasa Ravikirthi et al.
BIOTECHNOLOGY AND BIOENGINEERING (2011)
Evaluating 13C enrichment data of free amino acids for precise metabolic flux analysis
Eiji Mori et al.
BIOTECHNOLOGY JOURNAL (2011)
Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase
Christian Frezza et al.
NATURE (2011)
Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
Harry Yim et al.
NATURE CHEMICAL BIOLOGY (2011)
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
Jan Schellenberger et al.
NATURE PROTOCOLS (2011)
Synergy between C-13-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli
Xuewen Chen et al.
METABOLIC ENGINEERING (2011)
Geometry of nonlinear least squares with applications to sloppy models and optimization
Mark K. Transtrum et al.
PHYSICAL REVIEW E (2011)
Genome-Scale Consequences of Cofactor Balancing in Engineered Pentose Utilization Pathways in Saccharomyces cerevisiae
Amit Ghosh et al.
PLOS ONE (2011)
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
Keren Yizhak et al.
BIOINFORMATICS (2010)
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Jan Schellenberger et al.
BMC BIOINFORMATICS (2010)
Systems biology of microbial metabolism
Matthias Heinemann et al.
CURRENT OPINION IN MICROBIOLOGY (2010)
A protocol for generating a high-quality genome-scale metabolic reconstruction
Ines Thiele et al.
NATURE PROTOCOLS (2010)
Why are Nonlinear Fits to Data so Challenging?
Mark K. Transtrum et al.
PHYSICAL REVIEW LETTERS (2010)
A possibilistic framework for constraint-based metabolic flux analysis
Francisco Llaneras et al.
BMC SYSTEMS BIOLOGY (2009)
Applications of genome-scale metabolic reconstructions
Matthew A. Oberhardt et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
ADVANCES IN ANALYSIS OF MICROBIAL METABOLIC FLUXES VIA C-13 ISOTOPIC LABELING
Yinjie J. Tang et al.
MASS SPECTROMETRY REVIEWS (2009)
OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis
Lake-Ee Quek et al.
MICROBIAL CELL FACTORIES (2009)
GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions
Vinay Satish Kumar et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Metabolic flux analysis in Escherichia coli by integrating isotopic dynamic and isotopic stationary 13C labeling data
Jochen Schaub et al.
BIOTECHNOLOGY AND BIOENGINEERING (2008)
Metabolic footprinting in microbiology: methods and applications in functional genomics and biotechnology
Valeria Mapelli et al.
TRENDS IN BIOTECHNOLOGY (2008)
Direct measurement of isotopomer of intracellular metabolites using capillary electrophoresis time-of-flight mass spectrometry for efficient metabolic flux analysis
Yoshihiro Toya et al.
JOURNAL OF CHROMATOGRAPHY A (2007)
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
Robert Schuetz et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Incorporating metabolic flux ratios into constraint-based flux analysis by using artificial metabolites and converging ratio determinants
Hyung Seok Choi et al.
JOURNAL OF BIOTECHNOLOGY (2007)
Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation
Jin Hwan Park et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Metabolic flux analysis in a nonstationary system:: Fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol
Maciek R. Antoniewicz et al.
METABOLIC ENGINEERING (2007)
Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae for high-level production of isoprenoids
Yoichiro Shiba et al.
METABOLIC ENGINEERING (2007)
Global reconstruction of the human metabolic network based on genomic and bibliomic data
Natalie C. Duarte et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Determination of metabolic flux changes during fed-batch cultivation from measurements of intracellular amino acids by LC-MS/MS
Shintaro Iwatani et al.
JOURNAL OF BIOTECHNOLOGY (2007)
Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions
Maciek R. Antoniewicz et al.
METABOLIC ENGINEERING (2007)
Metabolic flux elucidation for large-scale models using C-13 labeled isotopes
Patrick F. Suthers et al.
METABOLIC ENGINEERING (2007)
Renormalization group approach to multiscale modelling in materials science
Nigel Goldenfeld et al.
JOURNAL OF STATISTICAL PHYSICS (2006)
Sloppy-model universality class and the Vandermonde matrix
Joshua J. Waterfall et al.
PHYSICAL REVIEW LETTERS (2006)
From in vivo to in silico biology and back
Barbara Di Ventura et al.
NATURE (2006)
Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements
Maciek R. Antoniewicz et al.
METABOLIC ENGINEERING (2006)
The model organism as a system: integrating 'omics' data sets
AR Joyce et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
Metabolic networks in motion: C-13-based flux analysis
Uwe Sauer
MOLECULAR SYSTEMS BIOLOGY (2006)
Metabolic functions of duplicate genes in Saccharomyces cerevisiae
L Kuepfer et al.
GENOME RESEARCH (2005)
Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
E Fischer et al.
NATURE GENETICS (2005)
Regulatory on/off minimization of metabolic flux changes after genetic perturbations
T Shlomi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Impact of transamination reactions and protein turnover on labeling dynamics in 13C-labeling experiments
T Grotkjær et al.
BIOTECHNOLOGY AND BIOENGINEERING (2004)
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli
U Sauer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes
SS Fong et al.
NATURE GENETICS (2004)
The statistical mechanics of complex signaling networks: nerve growth factor signaling
KS Brown et al.
PHYSICAL BIOLOGY (2004)
Bayesian ensemble approach to error estimation of interatomic potentials
SL Frederiksen et al.
PHYSICAL REVIEW LETTERS (2004)
Serial 13C-based flux analysis of an L-phenylalanine-producing E-coli strain using the sensor reactor
A Wahl et al.
BIOTECHNOLOGY PROGRESS (2004)
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
R Mahadevan et al.
METABOLIC ENGINEERING (2003)
Statistical mechanical approaches to models with many poorly known parameters
KS Brown et al.
PHYSICAL REVIEW E (2003)
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
JL Reed et al.
GENOME BIOLOGY (2003)
Analysis of optimality in natural and perturbed metabolic networks
D Segrè et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
13C metabolic flux analysis
W Wiechert
METABOLIC ENGINEERING (2001)
Share Paper
