Related references
Note: Only part of the references are listed.A DISTINCTIVE GENETIC FOOTPRINT OF ANCIENT HYBRIDIZATION
John E. McCormack et al.
AUK (2013)
Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex
Eric M. O'Neill et al.
MOLECULAR ECOLOGY (2013)
RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling
B. Arnold et al.
MOLECULAR ECOLOGY (2013)
A multi-locus phylogeny suggests an ancient hybridization event between Campephilus and melanerpine woodpeckers (Ayes: Picidae)
Jerome Fuchs et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
Deren A. R. Eaton et al.
SYSTEMATIC BIOLOGY (2013)
Cis-regulatory sequence variation and association with Mycoplasma load in natural populations of the house finch (Carpodacus mexicanus)
Niclas Backstroem et al.
ECOLOGY AND EVOLUTION (2013)
Characterization of whole genome amplified (WGA) DNA for use in genotyping assay development
Tao Han et al.
BMC GENOMICS (2012)
GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES
Zachariah Gompert et al.
EVOLUTION (2012)
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
Daniel C. Koboldt et al.
GENOME RESEARCH (2012)
The molecular basis of the plumage colour polymorphism in the Tahiti reed-warbler Acrocephalus caffer
Alice Cibois et al.
JOURNAL OF AVIAN BIOLOGY (2012)
Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
David Bryant et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences
John E. McCormack et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
Brant K. Peterson et al.
PLOS ONE (2012)
Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers
Eva-Maria Willing et al.
PLOS ONE (2012)
Candidate genes for carotenoid coloration in vertebrates and their expression profiles in the carotenoid-containing plumage and bill of a wild bird
N. Walsh et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
The genomics of speciation-with-gene-flow
Jeffrey L. Feder et al.
TRENDS IN GENETICS (2012)
Genome Patterns of Selection and Introgression of Haplotypes in Natural Populations of the House Mouse (Mus musculus)
Fabian Staubach et al.
PLOS GENETICS (2012)
GENETIC INTROGRESSION: AN INTEGRAL BUT NEGLECTED COMPONENT OF SPECIATION IN BIRDS
Frank E. Rheindt et al.
AUK (2011)
Testing for Ancient Admixture between Closely Related Populations
Eric Y. Durand et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Inference of human population history from individual whole-genome sequences
Heng Li et al.
NATURE (2011)
Bayesian inference of ancient human demography from individual genome sequences
Ilan Gronau et al.
NATURE GENETICS (2011)
SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies
E. R. Martin et al.
BIOINFORMATICS (2010)
DensiTree: making sense of sets of phylogenetic trees
Remco R. Bouckaert
BIOINFORMATICS (2010)
HISTORICAL DIVERGENCE AND GENE FLOW: COALESCENT ANALYSES OF MITOCHONDRIAL, AUTOSOMAL AND SEX-LINKED LOCI IN PASSERINA BUNTINGS
Matthew D. Carling et al.
EVOLUTION (2010)
Analysis from avian visual perspective reveals plumage colour differences among females of capuchino seedeaters (Sporophila)
Pilar Benites et al.
JOURNAL OF AVIAN BIOLOGY (2010)
Genome-wide SNP detection in the great tit Parus major using high throughput sequencing
Nikkie E. M. Van Bers et al.
MOLECULAR ECOLOGY (2010)
Genetic history of an archaic hominin group from Denisova Cave in Siberia
David Reich et al.
NATURE (2010)
Conspecific versus heterospecific gene exchange between populations of Darwin's finches
Peter R. Grant et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
A Draft Sequence of the Neandertal Genome
Richard E. Green et al.
SCIENCE (2010)
Evolutionary stasis: the stable chromosomes of birds
Hans Ellegren
TRENDS IN ECOLOGY & EVOLUTION (2010)
Understanding the onset of hybrid speciation
Arne W. Nolte et al.
TRENDS IN GENETICS (2010)
Difference in Plumage Color Used in Species Recognition between Incipient Species Is Linked to a Single Amino Acid Substitution in the Melanocortin-1 Receptor
J. Albert C. Uy et al.
AMERICAN NATURALIST (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
Scott V. Edwards
EVOLUTION (2009)
Nucleotide Variation, Linkage Disequilibrium and Founder-Facilitated Speciation in Wild Populations of the Zebra Finch (Taeniopygia guttata)
Christopher N. Balakrishnan et al.
GENETICS (2009)
Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations
A. W. Nolte et al.
MOLECULAR ECOLOGY (2009)
The timing of Neotropical speciation dynamics: A reconstruction of Myiopagis flycatcher diversification using phylogenetic and paleogeographic data
Frank E. Rheindt et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)
Reconstructing Indian population history
David Reich et al.
NATURE (2009)
Molecular and Evolutionary History of Melanism in North American Gray Wolves
Tovi M. Anderson et al.
SCIENCE (2009)
Genetic introgression, incomplete lineage sorting and faulty taxonomy create multiple cases of polyphyly in a montane clade of tyrant-flycatchers (Elaenia, Tyrannidae)
Frank E. Rheindt et al.
ZOOLOGICA SCRIPTA (2009)
The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing
Rob J. Kulathinal et al.
PLOS GENETICS (2009)
Evolution of avian plumage color in a tetrahedral color space: A phylogenetic analysis of new world buntings
Mary Caswell Stoddard et al.
AMERICAN NATURALIST (2008)
Habitat shifts in the evolutionary history of a Neotropical flycatcher lineage from forest and open landscapes
Frank E. Rheindt et al.
BMC EVOLUTIONARY BIOLOGY (2008)
DIVERGENCE ACROSS AUSTRALIA'S CARPENTARIAN BARRIER: STATISTICAL PHYLOGEOGRAPHY OF THE RED-BACKED FAIRY WREN(MALURUS MELANOCEPHALUS)
June Y. Lee et al.
EVOLUTION (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Subdivision in an ancestral species creates asymmetry in gene trees
Montgomery Slatkin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
DNA evidence shows vocalizations to be a better indicator of taxonomic limits than plumage patterns in Zimmerius tyrant-flycatchers
Frank E. Rheindt et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
Phylogenetic relationships of tyrant-flycatchers (Aves : Tyrannidae), with an emphasis on the elaeniine assemblage
Frank E. Rheindt et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
Gene Sampling Strategies for Multi-Locus Population Estimates of Genetic Diversity (θ)
Matthew D. Carling et al.
PLOS ONE (2007)
Avian visual pigments: Characteristics, spectral tuning, and evolution
Nathan S. Hart et al.
AMERICAN NATURALIST (2007)
Population structure and eigenanalysis
Nick Patterson et al.
PLOS GENETICS (2006)
Accuracy of coalescent likelihood estimates: Do we need more sites, more sequences, or more loci?
J Felsenstein
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Reconstructing human origins in the genomic era
Daniel Garrigan et al.
NATURE REVIEWS GENETICS (2006)
Human vision fails to distinguish widespread sexual dichromatism among sexually monochromatic birds
MD Eaton
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Hybridization as an invasion of the genome
J Mallet
TRENDS IN ECOLOGY & EVOLUTION (2005)
Hybridization and adaptive radiation
O Seehausen
TRENDS IN ECOLOGY & EVOLUTION (2004)
Conserved genetic basis of a quantitative plumage trait involved in mate choice
NI Mundy et al.
SCIENCE (2004)
Concordant evolution of plumage colour, feather microstructure and a melanocortin receptor gene between mainland and island populations of a fairy-wren
SM Doucet et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)
Detection of fruit and the selection of primate visual pigments for color vision
D Osorio et al.
AMERICAN NATURALIST (2004)
Hitchhiking and recombination in birds:: evidence from Mhc-linked and unlinked loci in Red-winged Blackbirds (Agelaius phoeniceus)
SV Edwards et al.
GENETICS RESEARCH (2004)
Colorful songbirds metabolize carotenoids at the integument
KJ McGraw
JOURNAL OF AVIAN BIOLOGY (2004)
Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel
DL Barker et al.
GENOME RESEARCH (2004)
Generating samples under a Wright-Fisher neutral model of genetic variation
RR Hudson
BIOINFORMATICS (2002)
Carotenoid-based ornamentation and status signaling in the house finch
KJ McGraw et al.
BEHAVIORAL ECOLOGY (2000)
Share Paper
