4.6 Article

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Related references

Note: Only part of the references are listed.
Article Evolutionary Biology

Guided Tree Topology Proposals for Bayesian Phylogenetic Inference

Sebastian Hohna et al.

SYSTEMATIC BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Inferring Speciation and Extinction Rates under Different Sampling Schemes

Sebastian Hohna et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Evolutionary Biology

Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection

Wangang Xie et al.

SYSTEMATIC BIOLOGY (2011)

Review Entomology

Bayesian Phylogenetics and Its Influence on Insect Systematics

Fredrik Ronquist et al.

ANNUAL REVIEW OF ENTOMOLOGY (2010)

Article Statistics & Probability

Examples of Adaptive MCMC

Gareth O. Roberts et al.

JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS (2009)

Article Genetics & Heredity

Phylogenetic Inference Using Whole Genomes

Bruce Rannala et al.

Annual Review of Genomics and Human Genetics (2008)

Article Biology

The conditioned reconstructed process

Tanja Gernhard

JOURNAL OF THEORETICAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

jModelTest: Phylogenetic model averaging

David Posada

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Article Evolutionary Biology

Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics

Clemens Lakner et al.

SYSTEMATIC BIOLOGY (2008)

Article Biochemistry & Molecular Biology

A general comparison of relaxed molecular clock models

Thomas Lepage et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Multidisciplinary Sciences

High-resolution species trees without concatenation

Scott V. Edwards et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Relaxed phylogenetics and dating with confidence

Alexei J. Drummond et al.

PLOS BIOLOGY (2006)

Article Evolutionary Biology

Computing Bayes factors using thermodynamic integration

N Lartillot et al.

SYSTEMATIC BIOLOGY (2006)

Article Biochemical Research Methods

Parallel metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

G Altekar et al.

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo

JP Huelsenbeck et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Biochemical Research Methods

MrBayes 3: Bayesian phylogenetic inference under mixed models

F Ronquist et al.

BIOINFORMATICS (2003)

Article Evolutionary Biology

Divergence time and evolutionary rate estimation with multilocus data

JL Thorne et al.

SYSTEMATIC BIOLOGY (2002)

Article Biochemical Research Methods

MRBAYES: Bayesian inference of phylogenetic trees

JP Huelsenbeck et al.

BIOINFORMATICS (2001)

Article Biochemistry & Molecular Biology

Bayesian selection of continuous-time Markov chain evolutionary models

MA Suchard et al.

MOLECULAR BIOLOGY AND EVOLUTION (2001)