4.6 Article

Testing congruence in phylogenomic analysis

Related references

Note: Only part of the references are listed.
Article Evolutionary Biology

Inconsistency of phylogenetic estimates from concatenated data under coalescence

Laura Salter Kubatko et al.

SYSTEMATIC BIOLOGY (2007)

Review Ecology

The supermatrix approach to systematics

Alan de Queiroz et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Article Multidisciplinary Sciences

Reconstructing the early evolution of Fungi using a six-gene phylogeny

Timothy Y. James et al.

NATURE (2006)

Article Multidisciplinary Sciences

The deepest divergences in land plants inferred from phylogenomic evidence

Yin-Long Qiu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Review Plant Sciences

Reconstructing reticulate evolutionary histories of plants

Kim McBreen et al.

TRENDS IN PLANT SCIENCE (2006)

Article Biochemistry & Molecular Biology

Visualizing and assessing phylogenetic congruence of core gene sets:: A case study of the γ-proteobacteria

E Susko et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Multidisciplinary Sciences

Toward automatic reconstruction of a highly resolved tree of life

FD Ciccarelli et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of primitive eukaryotes

AGB Simpson et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Review Computer Science, Interdisciplinary Applications

Tree disagreement: Measuring and testing incongruence in phylogenies

PJ Planet

JOURNAL OF BIOMEDICAL INFORMATICS (2006)

Article Biochemistry & Molecular Biology

Application of phylogenetic networks in evolutionary studies

DH Huson et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Multidisciplinary Sciences

Animal evolution and the molecular signature of radiations compressed in time

A Rokas et al.

SCIENCE (2005)

Review Ecology

The tree of eukaryotes

PJ Keeling et al.

TRENDS IN ECOLOGY & EVOLUTION (2005)

Article Multidisciplinary Sciences

Highways of gene sharing in prokaryotes

RG Beiko et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Myosin domain evolution and the primary divergence of eukaryotes

TA Richards et al.

NATURE (2005)

Article Evolutionary Biology

Do orthologous gene phylogenies really support tree-thinking?

E Bapteste et al.

BMC EVOLUTIONARY BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia

H Philippe et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

IQPNNI: Moving fast through tree space and stopping in time

LS Vinh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

N Lartillot et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

From gene trees to organismal phylogeny in prokaryotes:: The case of the γ-proteobacteria

E Lerat et al.

PLOS BIOLOGY (2003)

Article Evolutionary Biology

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

S Guindon et al.

SYSTEMATIC BIOLOGY (2003)

Article Genetics & Heredity

The widespread colonization island of Actinobacillus actinomycetemcomitans

PJ Planet et al.

NATURE GENETICS (2003)

Article Biochemistry & Molecular Biology

Combining multiple data sets in a likelihood analysis: Which models are the best?

T Pupko et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Evolutionary Biology

An approximately unbiased test of phylogenetic tree selection

H Shimodaira

SYSTEMATIC BIOLOGY (2002)

Article Biochemistry & Molecular Biology

When does the incongruence length difference test fail?

P Darlu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Multidisciplinary Sciences

The analysis of 100 genes supports the grouping of three highly divergent amoebae:: Dictyostelium, Entamoeba, and Mastigamoeba

E Bapteste et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemical Research Methods

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

HA Schmidt et al.

BIOINFORMATICS (2002)

Article Genetics & Heredity

Eubacterial phylogeny based on translational apparatus proteins

C Brochier et al.

TRENDS IN GENETICS (2002)

Article Multidisciplinary Sciences

A kingdom-level phylogeny of eukaryotes based on combined protein data

SL Baldauf et al.

SCIENCE (2000)