Journal
STANDARDS IN GENOMIC SCIENCES
Volume 10, Issue -, Pages -Publisher
BMC
DOI: 10.1186/s40793-015-0092-z
Keywords
Syntrophic acetate oxidizing bacteria; Acetogens; Syntrophy; Methanogens; Hydrogen producer; Methane production
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Funding
- Higher Education Commission, Pakistan
- University of the Punjab, Lahore, Pakistan
- Science for Life Laboratory (Uppsala)
- Swedish Bioinformatics Infrastructure for the Life Sciences
- Uppsala Multidisciplinary Center for Advanced Computational Science, Uppsala, Sweden
- EU-COST action BM1006-SeqAhead
- EU FP7 ALLBIO project [289452]
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Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane. The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes. Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3.
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