3.9 Article

Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3

Journal

STANDARDS IN GENOMIC SCIENCES
Volume 10, Issue -, Pages -

Publisher

BMC
DOI: 10.1186/s40793-015-0092-z

Keywords

Syntrophic acetate oxidizing bacteria; Acetogens; Syntrophy; Methanogens; Hydrogen producer; Methane production

Funding

  1. Higher Education Commission, Pakistan
  2. University of the Punjab, Lahore, Pakistan
  3. Science for Life Laboratory (Uppsala)
  4. Swedish Bioinformatics Infrastructure for the Life Sciences
  5. Uppsala Multidisciplinary Center for Advanced Computational Science, Uppsala, Sweden
  6. EU-COST action BM1006-SeqAhead
  7. EU FP7 ALLBIO project [289452]

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Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane. The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes. Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3.

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