Related references
Note: Only part of the references are listed.An accuracy evaluation of unstructured node-centred finite volume methods
Magnus Svaerd et al.
APPLIED NUMERICAL MATHEMATICS (2008)
A hybrid multiscale kinetic Monte Carlo method for simulation of copper electrodeposition
Zheming Zheng et al.
JOURNAL OF COMPUTATIONAL PHYSICS (2008)
On the existence of maximum principles in parabolic finite element equations
Vidar Thomee et al.
MATHEMATICS OF COMPUTATION (2008)
A hierarchy of approximations of the master equation scaled by a size parameter
Lars Ferm et al.
JOURNAL OF SCIENTIFIC COMPUTING (2008)
Evolutionary analysis of enzymes using Chisel
Alexis A. Rodriguez et al.
BIOINFORMATICS (2007)
Hybrid method for the chemical master equation
Andreas Hellander et al.
JOURNAL OF COMPUTATIONAL PHYSICS (2007)
Computational methods for diffusion-influenced biochemical reactions
Maciej Dobrzynski et al.
BIOINFORMATICS (2007)
Computing the moments of high dimensional solutions of the master equation
Stefan Engblom
APPLIED MATHEMATICS AND COMPUTATION (2006)
Noise-induced Min phenotypes in E-coli
David Fange et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
A cell-centred finite-volume approximation for anisotropic diffusion operators on unstructured meshes in any space dimension
R Eymard et al.
IMA JOURNAL OF NUMERICAL ANALYSIS (2006)
Dynamics of single-cell gene expression
Diane Longo et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
Incorporating diffusion in complex geometries into stochastic chemical kinetics simulations
SA Isaacson et al.
SIAM JOURNAL ON SCIENTIFIC COMPUTING (2006)
Green's-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space
JS van Zon et al.
JOURNAL OF CHEMICAL PHYSICS (2005)
Nested stochastic simulation algorithm for chemical kinetic systems with disparate rates
W E et al.
JOURNAL OF CHEMICAL PHYSICS (2005)
Noise in gene expression: Origins, consequences, and control
JM Raser et al.
SCIENCE (2005)
Stochastic model for Soj relocation dynamics in Bacillus subtilis
K Doubrovinski et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
Y Cao et al.
JOURNAL OF COMPUTATIONAL PHYSICS (2005)
Stochastic reaction-diffusion simulation with MesoRD
J Hattne et al.
BIOINFORMATICS (2005)
Simulating mesoscopic reaction-diffusion systems using the Gillespie algorithm
D Bernstein
PHYSICAL REVIEW E (2005)
Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
SS Andrews et al.
PHYSICAL BIOLOGY (2004)
Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
EL Haseltine et al.
JOURNAL OF CHEMICAL PHYSICS (2002)
Stochastic gene expression in a single cell
MB Elowitz et al.
SCIENCE (2002)
The future is noisy: The role of spatial fluctuations in genetic switching
R Metzler
PHYSICAL REVIEW LETTERS (2001)
Stochastic focusing: Fluctuation-enhanced sensitivity of intracellular regulation
J Paulsson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
A finite volume method for the approximation of diffusion operators on distorted meshes
F Hermeline
JOURNAL OF COMPUTATIONAL PHYSICS (2000)
Efficient exact stochastic simulation of chemical systems with many species and many channels
MA Gibson et al.
JOURNAL OF PHYSICAL CHEMISTRY A (2000)