Related references
Note: Only part of the references are listed.Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny
Stephen L. Cameron
ANNUAL REVIEW OF ENTOMOLOGY, VOL 59, 2014 (2014)
AliGROOVE - visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support
Patrick Kueck et al.
BMC BIOINFORMATICS (2014)
Evolution of attachment structures in the highly diverse Acercaria (Hexapoda)
Katrin Friedemann et al.
CLADISTICS (2014)
Bulk De Novo Mitogenome Assembly from Pooled Total DNA Elucidates the Phylogeny of Weevils (Coleoptera: Curculionoidea)
Conrad P. D. T. Gillett et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Phylogenomics resolves the timing and pattern of insect evolution
Bernhard Misof et al.
SCIENCE (2014)
Mitochondrial Phylogenomics of Early Land Plants: Mitigating the Effects of Saturation, Compositional Heterogeneity, and Codon-Usage Bias
Yang Liu et al.
SYSTEMATIC BIOLOGY (2014)
Heterogeneous Models Place the Root of the Placental Mammal Phylogeny
Claire C. Morgan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
A Unique Box in 28S rRNA Is Shared by the Enigmatic Insect Order Zoraptera and Dictyoptera
Yanhui Wang et al.
PLOS ONE (2013)
Mitochondrial Genomes of Two Barklice, Psococerastis albimaculata and Longivalvus hyalospilus (Psocoptera: Psocomorpha): Contrasting Rates in Mitochondrial Gene Rearrangement between Major Lineages of Psocodea
Hu Li et al.
PLOS ONE (2013)
Serine Codon-Usage Bias in Deep Phylogenomics: Pancrustacean Relationships as a Case Study
Omar Rota-Stabelli et al.
SYSTEMATIC BIOLOGY (2013)
PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
Nicolas Lartillot et al.
SYSTEMATIC BIOLOGY (2013)
Phylogeny of thrips (Insecta: Thysanoptera) based on five molecular loci
Rebecca S. Buckman et al.
SYSTEMATIC ENTOMOLOGY (2013)
Advances in Insect Phylogeny at the Dawn of the Postgenomic Era
Michelle D. Trautwein et al.
ANNUAL REVIEW OF ENTOMOLOGY, VOL 57 (2012)
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
Robert Lanfear et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Phylogenetically informative rearrangements in mitochondrial genomes of Coleoptera, and monophyly of aquatic elateriform beetles (Dryopoidea)
Martijn J. T. N. Timmermans et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Molecular phylogenetics: principles and practice
Ziheng Yang et al.
NATURE REVIEWS GENETICS (2012)
The Multipartite Mitochondrial Genome of Liposcelis bostrychophila: Insights into the Evolution of Mitochondrial Genomes in Bilateral Animals
Dan-Dan Wei et al.
PLOS ONE (2012)
The Complete Mitochondrial Genome and Novel Gene Arrangement of the Unique-Headed Bug Stenopirates sp (Hemiptera: Enicocephalidae)
Hu Li et al.
PLOS ONE (2012)
Comparative Mitogenomic Analysis of Damsel Bugs Representing Three Tribes in the Family Nabidae (Insecta: Hemiptera)
Hu Li et al.
PLOS ONE (2012)
Insect phylogenomics: results, problems and the impact of matrix composition
Harald O. Letsch et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
Higher-level phylogeny of the insect order Hemiptera: is Auchenorrhyncha really paraphyletic?
Jason R. Cryan et al.
SYSTEMATIC ENTOMOLOGY (2012)
ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny
Gerard Talavera et al.
BMC EVOLUTIONARY BIOLOGY (2011)
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
Herve Philippe et al.
PLOS BIOLOGY (2011)
Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda
Omar Rota-Stabelli et al.
GENOME BIOLOGY AND EVOLUTION (2010)
A Phylogenomic Approach to Resolve the Arthropod Tree of Life
Karen Meusemann et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
How stable is the Polyphyly of Lice hypothesis (Insecta: Psocodea)?: A comparison of phylogenetic signal in multiple genes
Kazunori Yoshizawa et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
Federico Abascal et al.
NUCLEIC ACIDS RESEARCH (2010)
Phylogeny and classification of the Psocodea, with particular reference to the lice (Psocodea: Phthiraptera)
C. H. C. Lyal
SYSTEMATIC ENTOMOLOGY (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
Nicolas Lartillot et al.
BIOINFORMATICS (2009)
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
P. Librado et al.
BIOINFORMATICS (2009)
The single mitochondrial chromosome typical of animals has evolved into 18 minichromosomes in the human body louse, Pediculus humanus
Renfu Shao et al.
GENOME RESEARCH (2009)
Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa
Erik A. Sperling et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Phylogenetic approaches for the analysis of mitochondrial genome sequence data in the Hymenoptera - A lineage with both rapidly and slowly evolving mitochondrial genomes
Mark Dowton et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)
Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics
Nathan C. Sheffield et al.
SYSTEMATIC BIOLOGY (2009)
A fast structural multiple alignment method for long RNA sequences
Yasuo Tabei et al.
BMC BIOINFORMATICS (2008)
SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis
Martin Kostka et al.
BMC BIOINFORMATICS (2008)
A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data
J. Daniel Fenn et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
A mitochondrial genome phylogeny of Diptera: whole genome sequence data accurately resolve relationships over broad timescales with high precision
Stephen L. Cameron et al.
SYSTEMATIC ENTOMOLOGY (2007)
Towards an 18S phylogeny of hexapods: Accounting for group-specific character covariance in optimized mixed nucleotide/doublet models
Bernhard Misof et al.
ZOOLOGY (2007)
Detecting and overcoming systematic errors in genome-scale phylogenies
Naiara Rodriguez-Ezpeleta et al.
SYSTEMATIC BIOLOGY (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Extraordinary number of gene rearrangements in the mitochondrial genomes of lice (Phthiraptera: Insecta)
C Covacin et al.
INSECT MOLECULAR BIOLOGY (2006)
PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change
M Fourment et al.
BMC EVOLUTIONARY BIOLOGY (2006)
Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution
A Hassanin
MOLECULAR PHYLOGENETICS AND EVOLUTION (2006)
Phylogenomics and the reconstruction of the tree of life
F Delsuc et al.
NATURE REVIEWS GENETICS (2005)
A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods
A Gibson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Multiple origins of parasitism in lice
KP Johnson et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)
Mitochondrial genome data alone are not enough to unambiguously resolve the relationships of Entognatha, Insecta and Crustacea sensu lato (Arthropoda)
SL Cameron et al.
CLADISTICS (2004)
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
N Lartillot et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Phylogenetic position of Phthiraptera (Insecta: Paraneoptera) and elevated rate of evolution in mitochondrial 12S and 16S rDNA
K Yoshizawa et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2003)
Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference
MS Rosenberg et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: thysanoptera):: Convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes
RF Shao et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
Evolutionary distance estimation under heterogeneous substitution pattern among lineages
K Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Increased rate of gene rearrangement in the mitochondrial genomes of three orders of hemipteroid insects
RF Shao et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera)
R Shao et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)