4.8 Article

Transcription Under Torsion

Related references

Note: Only part of the references are listed.
Review Biophysics

Torque Measurement at the Single-Molecule Level

Scott Forth et al.

ANNUAL REVIEW OF BIOPHYSICS, VOL 42 (2013)

Article Physics, Multidisciplinary

Torque Spectroscopy of DNA: Base-Pair Stability, Boundary Effects, Backbending, and Breathing Dynamics

Florian C. Oberstrass et al.

PHYSICAL REVIEW LETTERS (2013)

Article Physics, Multidisciplinary

Single-Molecule Study of the DNA Denaturation Phase Transition in the Force-Torsion Space

D. Salerno et al.

PHYSICAL REVIEW LETTERS (2012)

Article Multidisciplinary Sciences

Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA

Florian C. Oberstrass et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Chemistry, Multidisciplinary

Electron Beam Fabrication of Birefringent Microcylinders

Zhuangxiong Huang et al.

ACS NANO (2011)

Article Biochemistry & Molecular Biology

Linking RNA Polymerase Backtracking to Genome Instability in E. coli

Dipak Dutta et al.

Article Physics, Multidisciplinary

Underwound DNA under Tension: Structure, Elasticity, and Sequence-Dependent Behaviors

Maxim Y. Sheinin et al.

PHYSICAL REVIEW LETTERS (2011)

Article Mechanics

Comparison of pause predictions of two sequence-dependent transcription models

Lu Bai et al.

JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2010)

Article Biochemical Research Methods

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments

Jan Lipfert et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

Synergistic action of RNA polymerases in overcoming the nucleosomal barrier

Jing Jin et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Article Chemistry, Multidisciplinary

Magnetic Tweezers Measurement of Single Molecule Torque

Alfredo Celedon et al.

NANO LETTERS (2009)

Article Physics, Multidisciplinary

Measurement of the Torque on a Single Stretched and Twisted DNA Using Magnetic Tweezers

Francesco Mosconi et al.

PHYSICAL REVIEW LETTERS (2009)

Article Biochemistry & Molecular Biology

The functional response of upstream DNA to dynamic supercoiling in vivo

Fedor Kouzine et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)

Article Physics, Multidisciplinary

Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules

Scott Forth et al.

PHYSICAL REVIEW LETTERS (2008)

Article Physics, Fluids & Plasmas

Torque and dynamics of linking number relaxation in stretched supercoiled DNA

John F. Marko

PHYSICAL REVIEW E (2007)

Article Multidisciplinary Sciences

Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner

Eric A. Galburt et al.

NATURE (2007)

Article Biochemical Research Methods

Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection

Christopher Deufel et al.

NATURE METHODS (2007)

Article Physics, Multidisciplinary

Mechanochemical kinetics of transcription elongation

Lu Bai et al.

PHYSICAL REVIEW LETTERS (2007)

Review Biochemistry & Molecular Biology

Transcription elongation through a chromatin template

Christophe Lavelle

BIOCHIMIE (2007)

Article Multidisciplinary Sciences

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

Andrey Revyakin et al.

SCIENCE (2006)

Article Multidisciplinary Sciences

Mechanochemical analysis of DNA gyrase using rotor bead tracking

J Gore et al.

NATURE (2006)

Review Microbiology

DNA supercoiling - A global transcriptional regulator for enterobacterial growth?

A Travers et al.

NATURE REVIEWS MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation

A Revyakin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biophysics

A single-molecule technique to study sequence-dependent transcription pausing

A Shundrovsky et al.

BIOPHYSICAL JOURNAL (2004)

Article Biochemistry & Molecular Biology

Sequence-dependent kinetic model for transcription elongation by RNA polymerase

L Bai et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

The dynamic response of upstream DNA to transcription-generated torsional stress

F Kouzine et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)

Article Physics, Multidisciplinary

Optical torque wrench: Angular trapping, rotation, and torque detection of quartz microparticles

A La Porta et al.

PHYSICAL REVIEW LETTERS (2004)

Article Biochemistry & Molecular Biology

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking

KC Neuman et al.

Article Multidisciplinary Sciences

Structural transitions and elasticity from torque measurements on DNA

Z Bryant et al.

NATURE (2003)

Article Biophysics

Laser-induced heating in optical traps

EJG Peterman et al.

BIOPHYSICAL JOURNAL (2003)

Article Multidisciplinary Sciences

Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior

K Adelman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Physics, Fluids & Plasmas

Structural transitions in DNA driven by external force and torque -: art. no. 051903

A Sarkar et al.

PHYSICAL REVIEW E (2001)

Article Multidisciplinary Sciences

Single-molecule analysis of DNA uncoiling by a type II topoisomerase

TR Strick et al.

NATURE (2000)