Related references
Note: Only part of the references are listed.Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean
Paola R. Gomez-Pereira et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Bacterial community transcription patterns during a marine phytoplankton bloom
Johanna M. Rinta-Kanto et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Non-cooperative behaviour of bacteria prevents efficient phosphorus utilization of planktonic communities
Joerg Tittel et al.
JOURNAL OF PLANKTON RESEARCH (2012)
Seasonality in Ocean Microbial Communities
Stephen J. Giovannoni et al.
SCIENCE (2012)
Microbial Extracellular Enzymes and the Marine Carbon Cycle
Carol Arnosti
ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)
Differing Growth Responses of Major Phylogenetic Groups of Marine Bacteria to Natural Phytoplankton Blooms in the Western North Pacific Ocean
Yuya Tada et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
TonB or not TonB: is that the question?
Karla D. Krewulak et al.
BIOCHEMISTRY AND CELL BIOLOGY (2011)
HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors
Yuan Zhang et al.
BMC BIOINFORMATICS (2011)
Recent insights into iron import by bacteria
Volkmar Braun et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2011)
Automated Sample Area Definition for High-Throughput Microscopy
M. Zeder et al.
CYTOMETRY PART A (2011)
Formosa spongicola sp. nov., isolated from the marine sponge Hymeniacidon flavia
Byoung-Jun Yoon et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)
Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics
Marc Weber et al.
ISME JOURNAL (2011)
Distribution of Roseobacter RCA and SAR11 lineages in the North Sea and characteristics of an abundant RCA isolate
Helge-Ansgar Giebel et al.
ISME JOURNAL (2011)
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
Daniel P. R. Herlemann et al.
ISME JOURNAL (2011)
Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria
Chris R. Reisch et al.
NATURE (2011)
Taxonomic classification of metagenomic shotgun sequences with CARMA3
Wolfgang Gerlach et al.
NUCLEIC ACIDS RESEARCH (2011)
Particle tracking in the vicinity of Helgoland, North Sea: a model comparison
Ulrich Callies et al.
OCEAN DYNAMICS (2011)
Regulatory Effects of IFN-β on the Development of Experimental Autoimmune Uveoretinitis in B10RIII Mice
Min Sun et al.
PLOS ONE (2011)
Environmental and gut Bacteroidetes: the food connection
Francois Thomas et al.
FRONTIERS IN MICROBIOLOGY (2011)
Refinements to Label Free Proteome Quantitation: How to Deal with Peptides Shared by Multiple Proteins
Ying Zhang et al.
ANALYTICAL CHEMISTRY (2010)
Differences in carbohydrate profiles in batch culture grown planktonic and biofilm cells of Amphora rostrata Wm. Sm
Vishwas B. Khodse et al.
BIOFOULING (2010)
Artificial and natural duplicates in pyrosequencing reads of metagenomic data
Beifang Niu et al.
BMC BIOINFORMATICS (2010)
Helgoland Roads, North Sea: 45 Years of Change
Karen Helen Wiltshire et al.
ESTUARIES AND COASTS (2010)
Reinekea aestuarii sp nov., isolated from tidal flat sediment
Ahyoung Choi et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)
Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction
Robert M. Morris et al.
ISME JOURNAL (2010)
Genome characteristics of a generalist marine bacterial lineage
Ryan J. Newton et al.
ISME JOURNAL (2010)
FragGeneScan: predicting genes in short and error-prone reads
Mina Rho et al.
NUCLEIC ACIDS RESEARCH (2010)
Identification of Carbohydrate Metabolism Genes in the Metagenome of a Marine Biofilm Community Shown to Be Dominated by Gammaproteobacteria and Bacteroidetes
Jennifer L. Edwards et al.
GENES (2010)
REGIONAL METEOROLOGICAL-MARINE REANALYSES AND CLIMATE CHANGE PROJECTIONS Results for Northern Europe and Potential for Coastal and Offshore Applications
Ralf Weisse et al.
BULLETIN OF THE AMERICAN METEOROLOGICAL SOCIETY (2009)
Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea
Sarah M. Sowell et al.
ISME JOURNAL (2009)
Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm
Eric C. Martens et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
Brandi L. Cantarel et al.
NUCLEIC ACIDS RESEARCH (2009)
Diversity, ecology, and genomics of the Roseobacter clade:: a short overview
Thorsten Brinkhoff et al.
ARCHIVES OF MICROBIOLOGY (2008)
Resilience of North Sea phytoplankton spring bloom dynamics: An analysis of long-term data at Helgoland Roads
Karen Helen Wiltshire et al.
LIMNOLOGY AND OCEANOGRAPHY (2008)
Phylogenetic classification of short environmental DNA fragments
Lutz Krause et al.
NUCLEIC ACIDS RESEARCH (2008)
Habitat-Lite: A GSC case study based on free text terms for environmental metadata
Lynette Hirschman et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2008)
Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp MED152 (Flavobacteria)
Jose M. Gonzalez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
New substrates for TonB-dependent transport: do we only see the 'tip of the iceberg'?
Kristine Schauer et al.
TRENDS IN BIOCHEMICAL SCIENCES (2008)
SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Elmar Pruesse et al.
NUCLEIC ACIDS RESEARCH (2007)
Natural variation in SARII marine bacterioplankton genomes inferred from metagenomic data
Larry J. Wilhelm et al.
BIOLOGY DIRECT (2007)
High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11)
Kevin L. Vergin et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Reinekea blandensis sp nov., a marine, genome-sequenced gammaproteobacterium
Jarone Pinhassi et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)
Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system
Dagmar Woebken et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Ecological genomics of marine roseobacters
M. A. Moran et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Succession and Diel transcriptional response of the glycolate-utilizing component of the bacterial community during a spring phytoplankton bloom
Winnie W. Y. Lau et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin
Ulrich Stingl et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Whole genome analysis of the marine Bacteroidetes 'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter
Margarete Bauer et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences
Hideki Noguchi et al.
NUCLEIC ACIDS RESEARCH (2006)
Formosa agariphila sp nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa
OI Nedashkovskaya et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)
Genome streamlining in a cosmopolitan oceanic bacterium
SJ Giovannoni et al.
SCIENCE (2005)
Formosa algae gen. nov., sp nov., a novel member of the family Flavobacteriaceae
EP Ivanova et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
ARB:: a software environment for sequence data
W Ludwig et al.
NUCLEIC ACIDS RESEARCH (2004)
Revision and quality analyses of the Helgoland Reede long-term phytoplankton data archive
KH Wiltshire et al.
HELGOLAND MARINE RESEARCH (2004)
Ulvibacter litoralis gen. nov., sp nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata
OI Nedashkovskaya et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Changes in bacterioplankton composition under different phytoplankton regimens
J Pinhassi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Bloom of filamentous bacteria in a mesotrophic lake:: Identity and potential controlling mechanism
J Pernthaler et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Kordia algicida gen. nov., sp nov., an algicidal bacterium isolated from red tide
JH Sohn et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Reinekea marinisedimentorum gen. nov., sp nov., a novel gammaproteobacterium from marine coastal sediments
LA Romanenko et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
A statistical model for identifying proteins by tandem mass spectrometry
AI Nesvizhskii et al.
ANALYTICAL CHEMISTRY (2003)
mreps: efficient and flexible detection of tandem repeats in DNA
R Kolpakov et al.
NUCLEIC ACIDS RESEARCH (2003)
GenDB -: an open source genome annotation system for prokaryote genomes
F Meyer et al.
NUCLEIC ACIDS RESEARCH (2003)
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
A Keller et al.
ANALYTICAL CHEMISTRY (2002)
Partitioning of differently sized poly(ethylene glycol)s into OmpF porin
TK Rostovtseva et al.
BIOPHYSICAL JOURNAL (2002)
SSAHA: A fast search method for large DNA databases
ZM Ning et al.
GENOME RESEARCH (2001)
Zobellia galactanovorans gen. nov., sp nov., a marine species of Flavobacteriaceae isolated from a red alga, and classification of [Cytophaga] uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Zobellia uliginosa gen. nov., comb. nov.
T Barbeyron et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)
Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing
LB Fandino et al.
AQUATIC MICROBIAL ECOLOGY (2001)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Description of Cellulophaga algicola sp nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov.
JP Bowman
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)
Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
L Riemann et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)