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EMBO JOURNAL (2005)
Type II restriction endonucleases: structure and mechanism
A Pingoud et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2005)
Plasmid rolling-circle replication: highlights of two decades of research
SA Khan
PLASMID (2005)
Structural basis for substrate binding, cleavage and allostery in the tRNA maturase RNase Z
IL de la Sierra-Gallay et al.
NATURE (2005)
Homing endonuclease structure and function
BL Stoddard
QUARTERLY REVIEWS OF BIOPHYSICS (2005)
Structural and functional insight into sugar-nonspecific nucleases in host defense
KC Hsia et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)
Structures and mechanisms of Nudix hydrolases
AS Mildvan et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2005)
Zinc hydrolases: the mechanisms of zinc-dependent deacetylases
M Hernick et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2005)
Catalytic mechanism of Escherichia coli ribonuclease III: kinetic and inhibitor evidence for the involvement of two magnesium ions in RNA phosphodiester hydrolysis .
W Sun et al.
NUCLEIC ACIDS RESEARCH (2005)
Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: Pabl (5 '-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi
K Ishikawa et al.
NUCLEIC ACIDS RESEARCH (2005)
The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member
F Allemand et al.
NUCLEIC ACIDS RESEARCH (2005)
Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease
VL Arcus et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
A novel endonucleolytic mechanism to generate the CCA 3′ termini of tRNA molecules in Thermotoga maritima
A Minagawa et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein
M Graille et al.
EMBO JOURNAL (2004)
Evidence that polyadenylation factor CPSF-73 is the rnRNA 3′ processing endonuclease
K Ryan et al.
RNA (2004)
Purification and crystallization of Escherichia coli oligoribonuclease
TJ Fiedler et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces
AB Hickman et al.
MOLECULAR CELL (2004)
Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes
DR Davies et al.
JOURNAL OF MEDICINAL CHEMISTRY (2004)
Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme
R Zamel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Structure/function insights into Tn5 transposition
M Steiniger-White et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)
The enzymes and control of eukaryotic mRNA turnover
R Parker et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
DNA repair nucleases
TM Marti et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2004)
Structural basis for FEN-1 substrate specificity and PCNA-mediated activation in DNA replication and repair
BR Chapados et al.
CELL (2004)
Structure-based analysis of the metal-dependent mechanism of H-N-H endonucleases
MJ Maté et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Gene-targeted mice lacking the Trex1 (DNase III) 3′→5′ DNA exonuclease develop inflammatory myocarditis
M Morita et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Crystal structure of a self-splicing group I intron with both exons
PL Adams et al.
NATURE (2004)
Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks
MR Singleton et al.
NATURE (2004)
DNA cleavage by EcoRV endonuclease:: Two metal ions in three metal ion binding sites
NC Horton et al.
BIOCHEMISTRY (2004)
Identification of the catalytic motif of the microbial ribosome inactivating cytotoxin colicin E3
D Walker et al.
PROTEIN SCIENCE (2004)
Structure of the MutL C-terminal domain:: a model of intact MutL and its roles in mismatch repair
A Guarné et al.
EMBO JOURNAL (2004)
Flap endonuclease 1: A central component of DNA metabolism
Y Liu et al.
ANNUAL REVIEW OF BIOCHEMISTRY (2004)
Crystallographic structure of the nuclease domain of 3′hExo, a DEDDh family member, bound to rAMP
Y Cheng et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Structural mechanism for inactivation and activation of CAD/DFF40 in the apoptotic pathway
EJ Woo et al.
MOLECULAR CELL (2004)
Ring-shaped architecture of RecR: implications for its role in homologous recombinational DNA repair
BI Lee et al.
EMBO JOURNAL (2004)
RNA recognition and base flipping by the toxin sarcin
CC Correll et al.
JOURNAL OF SYNCHROTRON RADIATION (2004)
Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain
AJ Callaghan et al.
BIOCHEMISTRY (2003)
A specificity switch in selected Cre recombinase variants is mediated by macromolecular plasticity and water
EP Baldwin et al.
CHEMISTRY & BIOLOGY (2003)
Structural insights into single-stranded DNA binding and cleavage by F factor tral
S Datta et al.
STRUCTURE (2003)
The exonucleolytic and endonucleolytic cleavage activities of human exonuclease 1 are stimulated by an interaction with the carboxyl-terminal region of the Werner syndrome protein
S Sharma et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Purification, cloning, and characterization of XendoU, a novel endoribonuclease involved in processing of intron-encoded small nucleolar RNAs in Xenopus laevis
P Laneve et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
X-ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease: Similarity between its endonuclease domain and restriction enzymes
T Nishino et al.
STRUCTURE (2003)
Crystal structure of the Escherichia coli dcm very-short-patch DNA repair endonuclease bound to its reaction product-site in a DNA superhelix
KA Bunting et al.
NUCLEIC ACIDS RESEARCH (2003)
The pathway for DNA recognition and RNA integration by a group II intron retrotransposon
Y Aizawa et al.
MOLECULAR CELL (2003)
The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre
A Lagunavicius et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
X-ray structure and activity of the yeast Pop2 protein: a nuclease subunit of the mRNA deadenylase complex
S Thore et al.
EMBO REPORTS (2003)
Splicing double: Insights from the second spliceosome
AA Patel et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2003)
The structure of Escherichia coli RusA endonuclease reveals a new Holliday junction DNA binding fold
JB Rafferty et al.
STRUCTURE (2003)
Mn2+ is a native metal ion activator for bacteriophage λ protein phosphatase
TA Reiter et al.
BIOCHEMISTRY (2002)
Transition state stabilization by a catalytic RNA
PB Rupert et al.
SCIENCE (2002)
Characterization of nuclease-dependent functions of Exo1p in Saccharomyces cerevisiae
PT Tran et al.
DNA REPAIR (2002)
Magnesium chemistry and biochemistry
ME Maguire et al.
BIOMETALS (2002)
Structural and catalytic chemistry of magnesium-dependent enzymes
JA Cowan
BIOMETALS (2002)
Metallo-β-lactamase fold within nucleic acids processing enzymes:: the β-CASP family
I Callebaut et al.
NUCLEIC ACIDS RESEARCH (2002)
Structural unity among viral origin binding proteins: Crystal structure of the nuclease domain of adeno-associated virus Rep
AB Hickman et al.
MOLECULAR CELL (2002)
The chemical repertoire of natural ribozymes
JA Doudna et al.
NATURE (2002)
Bacterial conjugation:: a two-step mechanism for DNA transport
M Llosa et al.
MOLECULAR MICROBIOLOGY (2002)
Assigning a function to a conserved group of proteins:: the tRNA 3′-processing enzymes
S Schiffer et al.
EMBO JOURNAL (2002)
Cellular roles of DNA topoisomerases: A molecular perspective
JC Wang
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2002)
Structural aspects of the inhibition of DNase and rRNase colicins by their immunity proteins
OO Kolade et al.
BIOCHIMIE (2002)
The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity
A Yamagata et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Human exonuclease I is required for 5′ and 3′ mismatch repair.
J Genschel et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Structural basis for proofreading during replication of the Escherichia coli chromosome
S Hamdan et al.
STRUCTURE (2002)
Protein folding and unfolding at atomic resolution
AR Fersht et al.
CELL (2002)
Identification of residues in yeast Spo11p critical for meiotic DNA double-strand break formation
RL Diaz et al.
MOLECULAR AND CELLULAR BIOLOGY (2002)
Crystal structure of the fission yeast mitochondrial Holliday junction resolvase Ydc2
S Ceschini et al.
EMBO JOURNAL (2001)
Distortion of DNA junctions imposed by the binding of resolving enzymes: A fluorescence study
JM Fogg et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping
XJ Yang et al.
NATURE STRUCTURAL BIOLOGY (2001)
Nucleoside triphosphate-dependent restriction enzymes
DTF Dryden et al.
NUCLEIC ACIDS RESEARCH (2001)
Expansion of the zinc metallo-hydrolase family of the β-lactamase fold
H Daiyasu et al.
FEBS LETTERS (2001)
Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule
A Changela et al.
NATURE (2001)
Structural characteristics of protein binding sites for calcium and lanthanide ions
E Pidcock et al.
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2001)
The junction-resolving enzymes
DMJ Lilley et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2001)
Structural biochemistry and interaction architecture of the DNA double-strand break repair Mre11 nuclease and Rad50-ATPase
KP Hopfner et al.
CELL (2001)
Artemis, a novel DNA double-strand break repair/V(D)J recombination protein, is mutated in human severe combined immune deficiency
D Moshous et al.
CELL (2001)
Cytotoxic mechanism of the ribotoxin α-sarcin -: Induction of cell death via apoptosis
N Olmo et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2001)
Evidence that phenylalanine 69 in Escherichia coli RuvC resolvase forms a stacking interaction during binding and destabilization of a holliday junction DNA substrate
M Yoshikawa et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Basis for regulated RNA cleavage by functional analysis of RNase L and Ire1p
BH Dong et al.
RNA (2001)
Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis:: Mature 5S rRNA is dispensable for ribosome function
C Condon et al.
RNA (2001)
Cloning and characterization of a periplasmic nuclease of Vibrio vulnificus and its role in preventing uptake of foreign DNA
SI Wu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
Structure of the bacteriophage λ Ser/Thr protein phosphatase with sulfate ion bound in two coordination modes
WC Voegtli et al.
BIOCHEMISTRY (2000)
PIN domains in nonsense-mediated mRNA decay and RNAi
PM Clissold et al.
CURRENT BIOLOGY (2000)
Catalysis by Escherichia coli ribonuclease HI is facilitated by a phosphate group of the substrate
M Haruki et al.
BIOCHEMISTRY (2000)
Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA
G Obmolova et al.
NATURE (2000)
Inhibition of a ribosome-inactivating ribonuclease: the crystal structure of the cytotoxic domain of colicin E3 in complex with its immunity protein
S Carr et al.
STRUCTURE (2000)
Three-dimensional structure of the Tn5 synaptic complex transposition intermediate
DR Davies et al.
SCIENCE (2000)
Mobilization of chimeric oriT plasmids by F and R100-1:: Role of relaxosome formation in defining plasmid specificity
RA Fekete et al.
JOURNAL OF BACTERIOLOGY (2000)
A revised mechanism for the alkaline phosphatase reaction involving three metal ions
B Stec et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Novel insights into catalytic mechanism from a crystal structure of human topoisomerase I in complex with DNA
MR Redinbo et al.
BIOCHEMISTRY (2000)
The nuclease activity of the yeast Dna2 protein, which is related to the RecB-like nucleases, is essential in vivo
ME Budd et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p
Y Xue et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
Type I restriction systems: Sophisticated molecular machines (a legacy of Bertani and Weigle)
NE Murray
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)
Crystal structure of a plant ribonuclease, RNase LE
N Tanaka et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Structure of BamHI bound to nonspecific DNA: A model for DNA sliding
H Viadiu et al.
MOLECULAR CELL (2000)
The acidic triad conserved in type IA DNA topoisomerases is required for binding of Mg(II) and subsequent conformational change
CX Zhu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Catalytic sites for 3′ and 5′ incision of Escherichia coli nucleotide excision repair are both located in UvrC
EEA Verhoeven et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: Insights from phosphorothioate stereoselectivity
AK Kennedy et al.
CELL (2000)
Structure of the RNA polymerase domain of E-coli primase
JL Keck et al.
SCIENCE (2000)
DNA-bound structures and mutants reveal abasic DNA binding by APE1 DNA repair and coordination
CD Mol et al.
NATURE (2000)