4.5 Article

Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants

Journal

PROTEOMICS
Volume 14, Issue 20, Pages 2242-2248

Publisher

WILEY
DOI: 10.1002/pmic.201400249

Keywords

Alternative splicing; Bioinformatics; Domain-domain interaction; Protein-protein interactions; RNA-seq; Tissue-specific

Funding

  1. Senior Research Fellowship (SRF) from University Grants Commission (UGC), India
  2. CDFD

Ask authors/readers for more resources

The functional repertoire of genes in the eukaryotic organisms is enhanced by the phenomenon of alternative splicing. Hence, a node in a tissue specific protein-protein interaction (TS PPIN) network can be thought of as an ensemble of various spliced protein products of the corresponding gene expressed in that tissue. Here we demonstrate that the nodes that occupy topologically central positions characterized by high degree, betweenness, closeness, and eigenvector centrality values in TS PPINs of Homo sapiens are associated with high number of splice variants. We also show that the high centrality of these genes/nodes could in part be explained by the presence of a large number of promiscuous domains.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.5
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

No Data Available
No Data Available