Related references
Note: Only part of the references are listed.The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways
Julia M. Burkhart et al.
BLOOD (2012)
A Complex Standard for Protein Identification, Designed by Evolution
Marc Vaudel et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Modification Site Localization Scoring: Strategies and Performance
Robert J. Chalkley et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Analysis of the Resolution Limitations of Peptide Identification Algorithms
Niklaas Colaert et al.
JOURNAL OF PROTEOME RESEARCH (2011)
On Using Samples of Known Protein Content to Assess the Statistical Calibration of Scores Assigned to Peptide-Spectrum Matches in Shotgun Proteomics
Viktor Granholm et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Universal and Confident Phosphorylation Site Localization Using phosphoRS
Thomas Taus et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Confident Phosphorylation Site Localization Using the Mascot Delta Score
Mikhail M. Savitski et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Can the false-discovery rate be misleading?
Rodrigo Barboza et al.
PROTEOMICS (2011)
The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides
Florian Beck et al.
PROTEOMICS (2011)
SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches
Marc Vaudel et al.
PROTEOMICS (2011)
Unbiased Statistical Analysis for Multi-Stage Proteomic Search Strategies
Logan J. Everett et al.
JOURNAL OF PROTEOME RESEARCH (2010)
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
Alexey I. Nesvizhskii
JOURNAL OF PROTEOMICS (2010)
XTandem Parser: An open-source library to parse and analyse X!Tandem MS/MS search results
Thilo Muth et al.
PROTEOMICS (2010)
OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results
Harald Barsnes et al.
PROTEOMICS (2009)
The standard protein mix database: A diverse data set to assist in the production of improved peptide and protein identification software tools
John Klimek et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Joshua E. Elias et al.
NATURE METHODS (2007)
MascotDatfile: An open-source library to fully parse and analyse MASCOT MS/MS search results
Kenny Helsens et al.
PROTEOMICS (2007)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
Jesper V. Olsen et al.
CELL (2006)
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
Sean A. Beausoleil et al.
NATURE BIOTECHNOLOGY (2006)
PRIDE: The proteomics identifications database
L Martens et al.
PROTEOMICS (2005)
Open mass spectrometry search algorithm
LY Geer et al.
JOURNAL OF PROTEOME RESEARCH (2004)
TANDEM: matching proteins with tandem mass spectra
R Craig et al.
BIOINFORMATICS (2004)
UniProt: the Universal Protein knowledgebase
R Apweiler et al.
NUCLEIC ACIDS RESEARCH (2004)
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
A Keller et al.
ANALYTICAL CHEMISTRY (2002)