Related references
Note: Only part of the references are listed.The protein interaction network mediated by human SH3 domains
Martina Carducci et al.
BIOTECHNOLOGY ADVANCES (2012)
Annotator: Postprocessing Software for Generating Function-based Signatures from Quantitative Mass Spectrometry
Juliesta E. Sylvester et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification
Minjia Tan et al.
CELL (2011)
Recognition and Specificity Determinants of the Human Cbx Chromodomains
Lilia Kaustov et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
A Conserved Residue in the Yeast Bem1p SH3 Domain Maintains the High Level of Binding Specificity Required for Function
Maryna Gorelik et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
Proteomic Screening Method for Phosphopeptide Motif Binding Proteins Using Peptide Libraries
Heather R. Christofk et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Beyond natural antibodies: the power of in vitro display technologies
Andrew R. M. Bradbury et al.
NATURE BIOTECHNOLOGY (2011)
Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the GRB2 adaptor
Nicolas Bisson et al.
NATURE BIOTECHNOLOGY (2011)
Identification of lysine succinylation as a new post-translational modification
Zhihong Zhang et al.
NATURE CHEMICAL BIOLOGY (2011)
SAINT: probabilistic scoring of affinity purification-mass spectrometry data
Hyungwon Choi et al.
NATURE METHODS (2011)
Deciphering arginine methylation: Tudor tells the tale
Chen Chen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)
Inhibition of PI3K binding to activators by serine phosphorylation of PI3K regulatory subunit p85α Src homology-2 domains
Jennifer Y. Lee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cerevisiae and H. sapiens
Simona Panni et al.
PROTEOMICS (2011)
The SH2 Domain-Containing Proteins in 21 Species Establish the Provenance and Scope of Phosphotyrosine Signaling in Eukaryotes
Bernard A. Liu et al.
SCIENCE SIGNALING (2011)
Predicting conserved protein motifs with Sub-HMMs
Kevin Horan et al.
BMC BIOINFORMATICS (2010)
A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding
Nicolas Lenfant et al.
BMC GENOMICS (2010)
A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression
Edward L. Huttlin et al.
CELL (2010)
Constraining Binding Hot Spots: NMR and Molecular Dynamics Simulations Provide a Structural Explanation for Enthalpy-Entropy Compensation in SH2-Ligand Binding
Joshua M. Ward et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)
SH2 Domains Recognize Contextual Peptide Sequence Information to Determine Selectivity
Bernard A. Liu et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
High-resolution mapping of protein sequence-function relationships
Douglas M. Fowler et al.
NATURE METHODS (2010)
Generating and navigating proteome maps using mass spectrometry
Christian H. Ahrens et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)
The SUMO pathway: emerging mechanisms that shape specificity, conjugation and recognition
Jaclyn R. Gareau et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)
Molecular mechanisms in signal transduction at the membrane
Jay T. Groves et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Characterizing Tyrosine Phosphorylation Signaling in Lung Cancer Using SH2 Profiling
Kazuya Machida et al.
PLOS ONE (2010)
Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
Jesper V. Olsen et al.
SCIENCE SIGNALING (2010)
The Structural Basis of Peptide-Protein Binding Strategies
Nir London et al.
STRUCTURE (2010)
Structure/Function Implications in a Dynamic Complex of the Intrinsically Disordered Sic1 with the Cdc4 Subunit of an SCF Ubiquitin Ligase
Tanja Mittag et al.
STRUCTURE (2010)
Genomic and structural aspects of protein evolution
Cyrus Chothia et al.
BIOCHEMICAL JOURNAL (2009)
Defining the Human Deubiquitinating Enzyme Interaction Landscape
Mathew E. Sowa et al.
CELL (2009)
The Selectivity of Receptor Tyrosine Kinase Signaling Is Controlled by a Secondary SH2 Domain Binding Site
Jae Hyun Bae et al.
CELL (2009)
Dissecting protein function and signaling using protein microarrays
Alejandro Wolf-Yadlin et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2009)
14-3-3 proteins, FHA domains and BRCT domains in the DNA damage response
Duaa H. Mohammad et al.
DNA REPAIR (2009)
Array MAPPIT: High-Throughput Interactome Analysis in Mammalian Cells
Sam Lievens et al.
JOURNAL OF PROTEOME RESEARCH (2009)
Systems-level interactions between insulin-EGF networks amplify mitogenic signaling
Nikolay Borisov et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
Ubiquitin-binding domains - from structures to functions
Ivan Dikic et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
Binding specificity of SH2 domains: Insight from free energy simulations
Wenxun Gan et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Cell Signaling in Space and Time: Where Proteins Come Together and When They're Apart
John D. Scott et al.
SCIENCE (2009)
Rapid Evolution of Functional Complexity in a Domain Family
Andreas Ernst et al.
SCIENCE SIGNALING (2009)
Eukaryotic Protein Domains as Functional Units of Cellular Evolution
Jing Jin et al.
SCIENCE SIGNALING (2009)
Mammalian two-hybrids come of age
Sam Lievens et al.
TRENDS IN BIOCHEMICAL SCIENCES (2009)
Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins
Raffi Tonikian et al.
PLOS BIOLOGY (2009)
Pfam 10 years on: 10 000 families and still growing
Stephen John Sammut et al.
BRIEFINGS IN BIOINFORMATICS (2008)
High-order combination effects and biological robustness
Joseph Lehar et al.
MOLECULAR SYSTEMS BIOLOGY (2008)
Membrane-dependent signal integration by the Ras activator Son of sevenless
Jodi Gureasko et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Contextual Specificity in Peptide-Mediated Protein Interactions
Amelie Stein et al.
PLOS ONE (2008)
Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics
Mihaela E. Sardiu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Genome wide analysis of pathogenic SH2 domain mutations
Ilkka Lappalainen et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics
Caleb J. Bashor et al.
SCIENCE (2008)
A specificity map for the PDZ domain family
Raffi Tonikian et al.
PLOS BIOLOGY (2008)
PDZ domains of Par-3 as potential phosphoinositide signaling integrators
Hao Wu et al.
MOLECULAR CELL (2007)
Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy
Ido Amit et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
Hailiang Huang et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Dynamic scaffolding in a G protein-coupled signaling system
Prashant Mishra et al.
CELL (2007)
Analysis of protein complexes using mass spectrometry
Anne-Claude Gingras et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
PDZ domain binding selectivity is optimized across the mouse proteome
Michael A. Stiffler et al.
SCIENCE (2007)
High-throughput phosphotyrosine profiling using SH2 domains
Kazuya Machida et al.
MOLECULAR CELL (2007)
Polyelectrostatic interactions of disordered ligands suggest a physical basis for ultrasensitivity
Mikael Borg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Engineering synthetic signaling proteins with ultrasensitive input/output control
John E. Dueber et al.
NATURE BIOTECHNOLOGY (2007)
Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate
Drew M. Lowery et al.
EMBO JOURNAL (2007)
Local structural disorder imparts plasticity on linear motifs
Monika Fuxreiter et al.
BIOINFORMATICS (2007)
Dynamic control of signaling by modular adaptor proteins
Tony Pawson
CURRENT OPINION IN CELL BIOLOGY (2007)
Oncogenic re-wiring of cellular signaling pathways
T. Pawson et al.
ONCOGENE (2007)
Ubiquitin binds to and regulates a subset of SH3 domains
Svetoslava D. Stamenova et al.
MOLECULAR CELL (2007)
Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries
Raffi Tonikian et al.
NATURE PROTOCOLS (2007)
Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins
Hongbo Xie et al.
JOURNAL OF PROTEOME RESEARCH (2007)
Screening for PTB domain binding partners and ligand specificity using proteome-derived NPXY peptide arrays
Matthew J. Smith et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
A high efficiency strategy for binding property characterization of peptide-binding domains
Eli Song et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
Chad Haynes et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Reading protein modifications with interaction domains
Bruce T. Seet et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
The human and mouse complement of SH2 domain proteins -: Establishing the boundaries of phosphotyrosine signaling
Bernard A. Liu et al.
MOLECULAR CELL (2006)
Protein family expansions and biological complexity
Christine Vogel et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Cell-signalling dynamics in time and space
BN Kholodenko
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
A quantitative protein interaction network for the ErbB receptors using protein microarrays
RB Jones et al.
NATURE (2006)
BioGRID: a general repository for interaction datasets
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2006)
Novel Src homology 3 domain-binding motifs identified from proteomic screen of a pro-rich region
CYH Jia et al.
MOLECULAR & CELLULAR PROTEOMICS (2005)
WW domains provide a platform for the assembly of multiprotein networks
RJ Ingham et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
SPOT synthesis:: Reliability of array-based measurement of peptide binding affinity
AA Weiser et al.
ANALYTICAL BIOCHEMISTRY (2005)
Linear motifs: Evolutionary interaction switches
V Neduva et al.
FEBS LETTERS (2005)
High-throughput mapping of a dynamic signaling network in mammalian cells
M Barrios-Rodiles et al.
SCIENCE (2005)
An improved method for the synthesis of cellulose membrane-bound peptides with free C termini is useful for PDZ domain binding studies
P Boisguerin et al.
CHEMISTRY & BIOLOGY (2004)
An oriented peptide array library (OPAL) strategy to study protein-protein interactions
M Rodriguez et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
A map of WW domain family interactions
H Hu et al.
PROTEOMICS (2004)
Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems
T Pawson
CELL (2004)
Regulation of the NMDA receptor complex and trafficking by activity-dependent phosphorylation of the NR2B subunit PDZ ligand
HJ Chung et al.
JOURNAL OF NEUROSCIENCE (2004)
The complexity of complexes in signal transduction
WS Hlavacek et al.
BIOTECHNOLOGY AND BIOENGINEERING (2003)
CaMKII-dependent phosphorylation regulates SAP97/NR2A interaction
F Gardoni et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Redirecting tyrosine kinase signaling to an apoptotic caspase pathway through chimeric adaptor proteins
PL Howard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Mathematical modeling suggests cooperative interactions between a disordered polyvalent ligand and a single receptor site
P Klein et al.
CURRENT BIOLOGY (2003)
ELM server:: a new resource for investigating short functional sites in modular eukaryotic proteins
P Puntervoll et al.
NUCLEIC ACIDS RESEARCH (2003)
Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs
JC Obenauer et al.
NUCLEIC ACIDS RESEARCH (2003)
GlobPlot: exploring protein sequences for globularity and disorder
R Linding et al.
NUCLEIC ACIDS RESEARCH (2003)
Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors
BN Kholodenko
JOURNAL OF EXPERIMENTAL BIOLOGY (2003)
Assembly of cell regulatory systems through protein interaction domains
T Pawson et al.
SCIENCE (2003)
Proteomic analysis of post-translational modifications
M Mann et al.
NATURE BIOTECHNOLOGY (2003)
Exploring protein-protein interactions with phage display
SS Sidhu et al.
CHEMBIOCHEM (2003)
A protein-domain microarray identifies novel protein-protein interactions
A Espejo et al.
BIOCHEMICAL JOURNAL (2002)
The SPOT synthesis technique - Synthetic peptide arrays on membrane supports - principles and applications
R Frank
JOURNAL OF IMMUNOLOGICAL METHODS (2002)
A high-affinity Arg-X-X-Lys SH3 binding motif confers specificity for the interaction between gads and SLP-76 in T cell signaling
DM Berry et al.
CURRENT BIOLOGY (2002)
Probing the phosphopeptide specificities of protein tyrosine phosphatases, SH2 and PTB domains with combinatorial library methods
SW Vetter et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2002)
Evolutionary rate heterogeneity in proteins with long disordered regions
CJ Brown et al.
JOURNAL OF MOLECULAR EVOLUTION (2002)
PIP2-PDZ domain binding controls the association of syntenin with the plasma membrane
P Zimmermann et al.
MOLECULAR CELL (2002)
MINT: a Molecular INTeraction database
A Zanzoni et al.
FEBS LETTERS (2002)
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules
AHY Tong et al.
SCIENCE (2002)
CDD: a database of conserved domain alignments with links to domain three-dimensional structure
A Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2002)
Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication
P Nash et al.
NATURE (2001)
Enteropathogenic E-coli Tir binds Nck to initiate actin pedestal formation in host cells
S Gruenheid et al.
NATURE CELL BIOLOGY (2001)
A comprehensive two-hybrid analysis to explore the yeast protein interactome
T Ito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Why cytoplasmic signalling proteins should be recruited to cell membranes
BN Kholodenko et al.
TRENDS IN CELL BIOLOGY (2000)
Share Paper
